Ligand‐induced CaMKIIα hub Trp403 flip, hub domain stacking, and modulation of kinase activity

Narayanan D, Larsen A, Gauger S, Adafia R, Hammershøi R, Hamborg L, Bruus‐Jensen J, Griem‐Krey N, Gee C, Frølund B, Stratton M, Kuriyan J, Kastrup J, Langkilde A, Wellendorph P, Solbak S, Protein Science 33(10) (2024) DOI

SASDUX4 – Calcium/calmodulin-dependent protein kinase type II alpha (CaMKIIα) WT hub domain with 5-HDC

Calcium/calmodulin-dependent protein kinase type II subunit alpha
5-hydroxydiclofenac
MWI(0) 208 kDa
MWexpected 186 kDa
VPorod 372 nm3
log I(s) 1.16×10-1 1.16×10-2 1.16×10-3 1.16×10-4
Calcium/calmodulin-dependent protein kinase type II subunit alpha 5-hydroxydiclofenac small angle scattering data  s, nm-1
ln I(s)
Calcium/calmodulin-dependent protein kinase type II subunit alpha 5-hydroxydiclofenac Guinier plot ln 1.17×10-1 Rg: 4.5 nm 0 (4.5 nm)-2 s2
(sRg)2I(s)/I(0)
Calcium/calmodulin-dependent protein kinase type II subunit alpha 5-hydroxydiclofenac Kratky plot 1.104 0 3 sRg
Dmax: 17.5 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of calcium/calmodulin-dependent protein kinase type II alpha (CaMKIIα) WT hub domain with 5-HDC in 20 mM MES, 150 mM NaCl, 1 mM DTT, 100 µM 5-HDC, pH 6 were collected on the EMBL P12 beam line at PETRA III (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 3.40 mg/ml was measured at 20°C. 40 successive 0.090 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

These data were collected for comparison with the CaMKIIa WT hub without ligand. 5-HDC: https://pubchem.ncbi.nlm.nih.gov/compound/5-Hydroxydiclofenac

Calcium/calmodulin-dependent protein kinase type II subunit alpha (CaMKIIα WT hub)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dodecamer
Mon. MW   15.5 kDa
 
UniProt   Q9UQM7 (345-475)
Sequence   FASTA
 
5-hydroxydiclofenac (5-HDC)
Mol. type   Other
Olig. state   Monomer
Mon. MW   0.3 kDa
Chemical formula