The strand exchange domain of tumor suppressor PALB2 is intrinsically disordered and promotes oligomerization-dependent DNA compaction.

Kyriukha Y, Watkins MB, Redington JM, Chintalapati N, Ganti A, Dastvan R, Uversky VN, Hopkins JB, Pozzi N, Korolev S, iScience 27(12):111259 (2024) Europe PMC

SASDVR7 – PABL2 (Partner and localizer of BRCA2) incubated with dT50 (DNA)

Partner and localizer of BRCA2
MWexperimental 111 kDa
MWexpected 46 kDa
VPorod 236 nm3
log I(s) 4.25×100 4.25×10-1 4.25×10-2 4.25×10-3
Partner and localizer of BRCA2 small angle scattering data  s, nm-1
ln I(s)
Partner and localizer of BRCA2 Guinier plot ln 4.26×100 Rg: 4.6 nm 0 (4.6 nm)-2 s2
(sRg)2I(s)/I(0)
Partner and localizer of BRCA2 Kratky plot 1.104 0 3 sRg
p(r)
Partner and localizer of BRCA2 pair distance distribution function Rg: 4.8 nm 0 Dmax: 17.6 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of PABL2 (Partner and localizer of BRCA2) incubated with dT50 (DNA) in 20 mM HEPES, 160 mM NaCl, 0.5 mM TCEP pH 7.5, pH 7.5 were collected on the ID7A1 BioSAXS / HP-Bio Beamline beam line at the Cornell High Energy Synchrotron Source (CHESS) storage ring (Ithaca, NY, USA) using a Eiger 4M detector at a sample-detector distance of 1.8 m and at a wavelength of λ = 0.1097 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 3.70 mg/ml was measured at 23°C. 2632 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

EFA-separated main component profile from SEC-SAXS measurement of PABL2 incubated with dT50 (2:1 ratio protein:DNA). NOTE: There is a significant inconsistency between the calculated MW from sequence of the monomer (23 kDa) and the quoted experimental MW (50 kDa). The DNA mass has not been accounted for in the MW calculation. CAUTION: The X-ray exposure time is unlikely to be 2632 seconds.

Partner and localizer of BRCA2 (PALB2)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dimer
Mon. MW   22.9 kDa
 
UniProt   Q86YC2 (1-200)
Sequence   FASTA