KDSAXS: A tool for Analyzing Binding Equilibria with SAXS Data using Explicit Models

Gomes T, Ruiz L, Martin-Malpartida P, Bernadó P, Baptista A, Macias M, Cordeiro T, Journal of Molecular Biology :169103 (2025) DOI

SASDW89 – Proliferating Cell Nuclear Antigen (PCNA) sliding clamp

Proliferating cell nuclear antigen
MWexperimental 87 kDa
MWexpected 87 kDa
VPorod 137 nm3
log I(s) 6.03×101 6.03×100 6.03×10-1 6.03×10-2
Proliferating cell nuclear antigen small angle scattering data  s, nm-1
ln I(s)
Proliferating cell nuclear antigen Guinier plot ln 6.03×101 Rg: 3.4 nm 0 (3.4 nm)-2 s2
(sRg)2I(s)/I(0)
Proliferating cell nuclear antigen Kratky plot 1.104 0 3 sRg
Dmax: 9 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of Proliferating Cell Nuclear Antigen (PCNA) sliding clamp in 137 mM NaCl, 2.7 mM KCl, 10 mM sodium phosphate, 2 mM potassium phosphate (PBS), pH 7 were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY; Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 1.3 and 20 mg/ml were measured at 25°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.

Note that the Rg and MW reported are not correct as the profile has been truncated.

Proliferating cell nuclear antigen (PCNA)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Trimer
Mon. MW   29.1 kDa
 
UniProt   P12004 (1-261)
Sequence   FASTA