Tangled up in fibers: How a lytic polysaccharide monooxygenase binds its chitin substrate

Henrik Vinther Sørensen.

SASDWJ2 – 3 mg/mL β-chitin nanofibers from squid pens with a mixture of 0.625 mg/mL perdeuterated and 1.875 mg/mL non-deuterated N-acetylglucosamine binding Protein A (D-GbpA/H-GbpA) in 47 % D₂O

β-chitin nanofibers from squid pens
GlcNAc-binding protein A (perdeuterated)
GlcNAc-binding protein A
MWexpected 103 kDa
log I(s)
β-chitin nanofibers from squid pens GlcNAc-binding protein A (perdeuterated) GlcNAc-binding protein A small angle scattering data  s, nm-1
s2I(s)
β-chitin nanofibers from squid pens GlcNAc-binding protein A (perdeuterated) GlcNAc-binding protein A Kratky plot 0 s

Data validation


There are no models related to this curve.

SANS data from solutions of β-chitin nanofibers from squid pens mixed with deuterated and non-deuterated N-acetylglucosamine binding Protein A (D-GbpA/H-GbpA) in 20 mM acetate, 47% v/v D₂O, pH 5 were collected on the D11 beam line at the Institut Laue-Langevin (ILL; Grenoble, France). Data recorded as I(s) vs s (where s = 4πsinθ/λ, and 2θ is the scattering angle), were collected a sample concentration of 3 mg/mL chitin combined with 0.625 mg/mL D-GbpA and 1.875 mg/mL H-GbpA at 25 degrees centigrade using three instrument configurations: Set-up 1: Sample-Detector distance, 1.7 m; Collimation distance, 5.5 m; Wavelength, 0.56 nm; Frames, 1; Time per frame, 900 s. Set-up 2: Sample-Detector distance, 8.0 m; Collimation distance, 8.0 m; Wavelength, 0.56 nm; Frames, 1; Time per frame, 900 s. Set-up 3: Sample-Detector distance, 38.95 m; Collimation distance, 40.0 m; Wavelength, 0.56 nm; Frames, 1; Time per frame, 900 s.

Guinier analysis and subsequent Rg, I(0) and MW parameters are not applicable for this entry as the Guinier-region occurs at a much lower s-range than the data includes. The chitin fibers are micrometers long.

β-chitin nanofibers from squid pens (β-chitin)
Mol. type   Other
Organism   Squid
Mon. MW   0.2 kDa
Chemical formula
 
GlcNAc-binding protein A (perdeuterated) (D-GbpA)
Mol. type   Protein
Organism   Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Olig. state   Monomer
Mon. MW   51.3 kDa
 
UniProt   Q9KLD5 (24-485)
Sequence   FASTA
 
GlcNAc-binding protein A (H-GbpA)
Mol. type   Protein
Organism   Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Olig. state   Monomer
Mon. MW   51.3 kDa
 
UniProt   Q9KLD5 (24-485)
Sequence   FASTA