Small-angle X-ray scattering of engineered antigen-binding fragments: the case of glycosylated Fab from the Mannitou IgM antibody.

Semwal S, Karamolegkou M, Flament S, Raouraoua N, Verstraete K, Thureau A, Wien F, Bray F, Savvides SN, Bouckaert J, Acta Crystallogr F Struct Biol Commun (2025) Europe PMC

SASDWK2 – Mannitou IgM Fab Monomer

IgM Mannitou Fab Heavy Chain
IgM Mannitou Fab Light Chain
MWI(0) 53 kDa
MWexpected 50 kDa
VPorod 74 nm3
log I(s) 9.22×101 9.22×100 9.22×10-1 9.22×10-2
IgM Mannitou Fab Heavy Chain IgM Mannitou Fab Light Chain small angle scattering data  s, nm-1
ln I(s)
IgM Mannitou Fab Heavy Chain IgM Mannitou Fab Light Chain Guinier plot ln 9.22×101 Rg: 2.8 nm 0 (2.8 nm)-2 s2
(sRg)2I(s)/I(0)
IgM Mannitou Fab Heavy Chain IgM Mannitou Fab Light Chain Kratky plot 1.104 0 3 sRg
p(r)
IgM Mannitou Fab Heavy Chain IgM Mannitou Fab Light Chain pair distance distribution function Rg: 2.9 nm 0 Dmax: 12.5 nm

Data validation


Fits and models


log I(s)
 s, nm-1
IgM Mannitou Fab Heavy Chain IgM Mannitou Fab Light Chain ALPHAFOLD model

log I(s)
 s, nm-1
IgM Mannitou Fab Heavy Chain IgM Mannitou Fab Light Chain ALPHAFOLD model

Synchrotron SAXS data from solutions of mannitou IgM Fab in 20 mM HEPES, 300 mM NaCl, pH 7.5 were collected on the SWING beam line at SOLEIL (Saint-Aubin, France) using a Eiger 4M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 9.2 mg/ml was injected at a 0.30 ml/min flow rate onto a Agilent Bio SEC-3, 300 Å column at 15°C. 580 successive 0.990 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

IgM Mannitou Fab Heavy Chain (Fab Monomer)
Mol. type   Protein
Organism   Mus musculus
Olig. state   Monomer
Mon. MW   25.6 kDa
Sequence   FASTA
 
IgM Mannitou Fab Light Chain
Mol. type   Protein
Organism   Mus musculus
Olig. state   Monomer
Mon. MW   24.2 kDa
Sequence   FASTA