Extremophilic hemoglobins: The structure of Shewanella benthica truncated hemoglobin N

Martinez Grundman J, Schultz T, Schlessman J, Johnson E, Gillilan R, Lecomte J, Journal of Biological Chemistry :108223 (2025) DOI

SASDWK4 – Shewanella benthica hemoglobin

Group 1 truncated hemoglobin (C51S, C71S)
MWexperimental 18 kDa
MWexpected 13 kDa
VPorod 30 nm3
log I(s) 1.77×10-2 1.77×10-3 1.77×10-4 1.77×10-5
Group 1 truncated hemoglobin (C51S, C71S) small angle scattering data  s, nm-1
ln I(s)
Group 1 truncated hemoglobin (C51S, C71S) Guinier plot ln 1.77×10-2 Rg: 1.8 nm 0 (1.8 nm)-2 s2
(sRg)2I(s)/I(0)
Group 1 truncated hemoglobin (C51S, C71S) Kratky plot 1.104 0 3 sRg
Dmax: 5.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Group 1 truncated hemoglobin (C51S, C71S) PDB (PROTEIN DATA BANK) model
Group 1 truncated hemoglobin (C51S, C71S) PDB (PROTEIN DATA BANK) model

Synchrotron SAXS data from solutions of Shewanella benthica hemoglobin in 14 mM Tris, 6 mM potassium phosphate, pH 7 were collected on the ID7A1 BioSAXS / HP-Bio Beamline beam line at the Cornell High Energy Synchrotron Source (CHESS) storage ring (Ithaca, NY, USA) using a Eiger 4M detector at a sample-detector distance of 1.6 m and at a wavelength of λ = 0.1241 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 100.00 μl sample at 10 mg/ml was injected at a 0.50 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 23°C. One 2 second frame was collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

40% monomer + 60% dimer. Single 2-sec exposure from peak of SAXS chromatogram. Fit to monomer and dimer from PDB: 7TT9 via OLIGOMER.

Group 1 truncated hemoglobin (C51S, C71S) (S2SbHbN)
Mol. type   Protein
Organism   Shewanella benthica KT99
Olig. state   Other
Mon. MW   12.8 kDa
 
UniProt   A9DF82 (2-117)
Sequence   FASTA
 
PDB ID   7TT9
 
PDB ID   7TT9