Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans

Irumagawa S, Hiemori K, Saito S, Tateno H, Arai R
International Journal of Molecular Sciences 23(2):676 (2022 Jan 08)

doi: 10.3390/ijms23020676
Submitted to SASBDB: 2021 Dec 28
Published in SASBDB:

SASDNC3 – Lectin nano-block dimer of WA20-SL-ACG

Lectin nano-block WA20-SL-ACG experimental SAS data
DAMMIN model
Sample: Lectin nano-block WA20-SL-ACG dimer, 60 kDa protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Jun 20
RgGuinier 3.1 nm
Dmax 14.9 nm
VolumePorod 82 nm3

SASDND3 – Lectin nano-block tetramer of WA20-SL-ACG

Lectin nano-block WA20-SL-ACG experimental SAS data
CORAL model
Sample: Lectin nano-block WA20-SL-ACG tetramer, 121 kDa protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Jun 20
RgGuinier 4.7 nm
Dmax 18.6 nm
VolumePorod 183 nm3

SASDNE3 – Lectin nano-block hexamer of WA20-SL-ACG

Lectin nano-block WA20-SL-ACG experimental SAS data
CORAL model
Sample: Lectin nano-block WA20-SL-ACG hexamer, 181 kDa protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Jun 20
RgGuinier 5.4 nm
Dmax 24.2 nm
VolumePorod 313 nm3

SASDNF3 – Lectin nano-block dimer of WA20-H-ACG

Lectin nano-block WA20-H-ACG experimental SAS data
DAMMIN model
Sample: Lectin nano-block WA20-H-ACG dimer, 59 kDa protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Oct 31
RgGuinier 3.9 nm
Dmax 18.1 nm
VolumePorod 85 nm3

SASDNG3 – Lectin nano-block dimer of WA20-ΔN3ACG

Lectin nano-block WA20-ΔN3ACG experimental SAS data
DAMMIN model
Sample: Lectin nano-block WA20-ΔN3ACG dimer, 58 kDa protein
Buffer: 20 mM HEPES, 150 mM NaCl, 5% glycerol,, pH: 7.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Oct 31
RgGuinier 4.1 nm
Dmax 21.6 nm
VolumePorod 87 nm3