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10 hits found for Andreas Schlundt

SASDVX2 – Full-length SARS-CoV-2 5'ge element stem-loop 5 (5_SL5)

full stem-loop 5 of SARS-CoV-2 5'genomic end experimental SAS data
PYMOL model
Sample: full stem-loop 5 of SARS-CoV-2 5'genomic end monomer, 48 kDa Severe acute respiratory … RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, pH: 6.2
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Aug 7
Dissecting the Conformational Heterogeneity of Stem-Loop Substructures of the Fifth Element in the 5'-Untranslated Region of SARS-CoV-2. J Am Chem Soc 146(44):30139-30154 (2024)
...Schlundt A, Schwalbe H
RgGuinier 4.3 nm
Dmax 13.8 nm

SASDVY2 – Sub-element stem-loop 5a within the SARS-CoV-2 5'ge element stem-loop 5 (5_SL5)

sub-element stem-loop 5a from SARS-CoV-2 5'genomic end experimental SAS data
PYMOL model
Sample: sub-element stem-loop 5a from SARS-CoV-2 5'genomic end monomer, 11 kDa Severe acute respiratory … RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, pH: 6.2
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Aug 7
Dissecting the Conformational Heterogeneity of Stem-Loop Substructures of the Fifth Element in the 5'-Untranslated Region of SARS-CoV-2. J Am Chem Soc 146(44):30139-30154 (2024)
...Schlundt A, Schwalbe H
RgGuinier 1.9 nm
Dmax 6.0 nm

SASDVC3 – Sub-element stem-loop 5b within the SARS-CoV-2 5'ge element stem-loop 5 (5_SL5)

sub-element stem-loop 5b from SARS-CoV-2 5'genomic end experimental SAS data
PYMOL model
Sample: sub-element stem-loop 5b from SARS-CoV-2 5'genomic end monomer, 8 kDa Severe acute respiratory … RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, pH: 6.2
Experiment: SAXS data collected at BM29, ESRF on 2021 Feb 3
Dissecting the Conformational Heterogeneity of Stem-Loop Substructures of the Fifth Element in the 5'-Untranslated Region of SARS-CoV-2. J Am Chem Soc 146(44):30139-30154 (2024)
...Schlundt A, Schwalbe H
RgGuinier 1.4 nm
Dmax 4.3 nm

SASDRV7 – SARS-CoV-2 5' untranslated region stem-loop 4 RNA (5_SL4) in phosphate buffer

stem-loop 4 from SARS-CoV-2 5'-UTR experimental SAS data
stem-loop 4 from SARS-CoV-2 5'-UTR Kratky plot
Sample: stem-loop 4 from SARS-CoV-2 5'-UTR monomer, 14 kDa SARS coronavirus 2-Wuhan RNA
Buffer: 25 mM potassium phosphate pH 6.5, 150 mM KCl, 2 mM TCEP, pH: 6.5
Experiment: SAXS data collected at EMBL P12, PETRA III on 2020 Aug 7
High-resolution structure of stem-loop 4 from the 5'-UTR of SARS-CoV-2 solved by solution state NMR. Nucleic Acids Res (2023)
Vögele J, Hymon D, Martins J, Ferner J, Jonker HRA, Hargrove AE, Weigand JE, Wacker A, Schwalbe H, Wöhnert J, Duchardt-Ferner E
RgGuinier 2.1 nm
Dmax 7.0 nm
VolumePorod 22 nm3

SASDMR9 – Guanidine-II Riboswitch from Escherichia coli 23mer

Guanidin-II riboswitch 23mer experimental SAS data
Guanidin-II riboswitch 23mer Kratky plot
Sample: Guanidin-II riboswitch 23mer monomer, 7 kDa Escherichia coli RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, pH: 6.2
Experiment: SAXS data collected at BM29, ESRF on 2021 Feb 13
Structure and Dynamics of the Guanidine-II Riboswitch from Escherichia coli by NMR Spectroscopy and Small-angle X-ray Scattering (SAXS). Chembiochem (2021)
...Schlundt A, Wacker A, Schwalbe H
RgGuinier 1.5 nm
Dmax 4.8 nm
VolumePorod 14 nm3

SASDMS9 – Guanidine-II Riboswitch from Escherichia coli 23mer with Mg2+

Guanidin-II riboswitch 23mer experimental SAS data
Guanidin-II riboswitch 23mer Kratky plot
Sample: Guanidin-II riboswitch 23mer monomer, 7 kDa Escherichia coli RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, 10 mM Mg2+, pH: 6.2
Experiment: SAXS data collected at BM29, ESRF on 2021 Feb 13
Structure and Dynamics of the Guanidine-II Riboswitch from Escherichia coli by NMR Spectroscopy and Small-angle X-ray Scattering (SAXS). Chembiochem (2021)
...Schlundt A, Wacker A, Schwalbe H
RgGuinier 1.8 nm
Dmax 5.8 nm
VolumePorod 15 nm3

SASDMT9 – Guanidine-II Riboswitch from Escherichia coli 23mer with Mg2+ and Gdn ligand

Guanidin-II riboswitch 23mer experimental SAS data
Guanidin-II riboswitch 23mer Kratky plot
Sample: Guanidin-II riboswitch 23mer monomer, 7 kDa Escherichia coli RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, 10 mM Mg2+, 5 mM GdnCl, pH: 6.2
Experiment: SAXS data collected at BM29, ESRF on 2021 Feb 13
Structure and Dynamics of the Guanidine-II Riboswitch from Escherichia coli by NMR Spectroscopy and Small-angle X-ray Scattering (SAXS). Chembiochem (2021)
...Schlundt A, Wacker A, Schwalbe H
RgGuinier 2.2 nm
Dmax 8.8 nm
VolumePorod 19 nm3

SASDMU9 – Guanidine-II Riboswitch from Escherichia coli 49mer

Guanidin-II riboswitch 49mer experimental SAS data
Guanidin-II riboswitch 49mer Kratky plot
Sample: Guanidin-II riboswitch 49mer dimer, 32 kDa Escherichia coli RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, pH: 6.2
Experiment: SAXS data collected at BM29, ESRF on 2021 Feb 13
Structure and Dynamics of the Guanidine-II Riboswitch from Escherichia coli by NMR Spectroscopy and Small-angle X-ray Scattering (SAXS). Chembiochem (2021)
...Schlundt A, Wacker A, Schwalbe H
RgGuinier 4.1 nm
Dmax 16.9 nm
VolumePorod 56 nm3

SASDMV9 – Guanidine-II Riboswitch from Escherichia coli 49mer with Mg2+

Guanidin-II riboswitch 49mer experimental SAS data
Guanidin-II riboswitch 49mer Kratky plot
Sample: Guanidin-II riboswitch 49mer dimer, 32 kDa Escherichia coli RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, 10 mM Mg2+, pH: 6.2
Experiment: SAXS data collected at BM29, ESRF on 2021 Feb 13
Structure and Dynamics of the Guanidine-II Riboswitch from Escherichia coli by NMR Spectroscopy and Small-angle X-ray Scattering (SAXS). Chembiochem (2021)
...Schlundt A, Wacker A, Schwalbe H
RgGuinier 4.2 nm
Dmax 18.1 nm
VolumePorod 57 nm3

SASDMW9 – Guanidine-II Riboswitch from Escherichia coli 49mer with Mg2+ and Gdn ligand

Guanidin-II riboswitch 49mer experimental SAS data
Guanidin-II riboswitch 49mer Kratky plot
Sample: Guanidin-II riboswitch 49mer hexamer, 95 kDa Escherichia coli RNA
Buffer: 25 mM potassium phosphate, 50 mM KCl, 10 mM Mg2+, 5 mM GdnCl, pH: 6.2
Experiment: SAXS data collected at BM29, ESRF on 2021 Feb 13
Structure and Dynamics of the Guanidine-II Riboswitch from Escherichia coli by NMR Spectroscopy and Small-angle X-ray Scattering (SAXS). Chembiochem (2021)
...Schlundt A, Wacker A, Schwalbe H
RgGuinier 8.8 nm
Dmax 33.6 nm
VolumePorod 442 nm3