Cryo-EM analysis of complement C3 reveals a reversible major opening of the macroglobulin ring

Martin Høgholm Jørgensen.

SASDTU8 – Complement C3* at 1.25 mg/mL (pH 6.0, 200 mM NaCl)

Complement C3 (Δ668-671)
MWexperimental 243 kDa
MWexpected 187 kDa
VPorod 357 nm3
log I(s) 9.65×10-2 9.65×10-3 9.65×10-4 9.65×10-5
Complement C3 (Δ668-671) small angle scattering data  s, nm-1
ln I(s)
Complement C3 (Δ668-671) Guinier plot ln 9.65×10-2 Rg: 5.4 nm 0 (5.4 nm)-2 s2
(sRg)2I(s)/I(0)
Complement C3 (Δ668-671) Kratky plot 1.104 0 3 sRg
p(r)
Complement C3 (Δ668-671) pair distance distribution function Rg: 5.6 nm 0 Dmax: 21.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Complement C3 (Δ668-671) CORAL model

Synchrotron SAXS data from solutions of complement C3* in 20 mM MES pH 6.0, 200 mM NaCl, pH 6 were collected on the EMBL P12 beam line at PETRA III (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 1.25 mg/ml was measured at 8°C. 40 successive 0.095 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

CAUTION! The low-angle SAXS intensities encompassing the entire Guinier region - and beyond to higher angle - (0.03 < s < 0.34 nm-1) have been removed when assessing the model fit to the data. Consequently, the model fit and particle sizing cannot be validated (e.g., Rg(model) = 4.8 nm; Rg(experiment) = 5.5 nm; Dmax model = 14.6 nm; Dmax(experiment) = 21.8 nm, etc).

Complement C3 (Δ668-671) (C3)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   186.5 kDa
 
UniProt   P01024 (1-1663)
Sequence   FASTA