Isotype Switching Converts Anti-CD40 Antagonism to Agonism to Elicit Potent Antitumor Activity

Yu X, Chan H, Fisher H, Penfold C, Kim J, Inzhelevskaya T, Mockridge C, French R, Duriez P, Douglas L, English V, Verbeek J, White A, Tews I, Glennie M, Cragg M, Cancer Cell (2020) DOI

SASDHN8 – Human tumor necrosis factor receptor superfamily member 5 (CD40) extracellular domain in complex with human immunoglobulin gamma 1 (IgG1) 341G2 F(ab)

Tumor necrosis factor receptor superfamily member 5
Human 341G2 F(ab)
MWexperimental 78 kDa
MWexpected 92 kDa
VPorod 97 nm3
log I(s) 1.32×10-1 1.32×10-2 1.32×10-3 1.32×10-4
Tumor necrosis factor receptor superfamily member 5 Human 341G2 F(ab) small angle scattering data  s, nm-1
ln I(s)
Tumor necrosis factor receptor superfamily member 5 Human 341G2 F(ab) Guinier plot ln 1.33×10-1 Rg: 3.7 nm 0 (3.7 nm)-2 s2
(sRg)2I(s)/I(0)
Tumor necrosis factor receptor superfamily member 5 Human 341G2 F(ab) Kratky plot 1.104 0 3 sRg
p(r)
Tumor necrosis factor receptor superfamily member 5 Human 341G2 F(ab) pair distance distribution function Rg: 3.8 nm 0 Dmax: 13.4 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Tumor necrosis factor receptor superfamily member 5 Human 341G2 F(ab) HADDOCK model

Synchrotron SAXS data from solutions of the extracellular domain of CD40 in complex with IgG1 341G2 F(ab) in phosphate-buffered saline, pH 7 were collected on the B21 beam line at the Diamond Light Source (Didcot, UK) using a Pilatus 2M detector at a sample-detector distance of 4.0 m and at a wavelength of λ = 0.1 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 45 μl sample at 7.7 mg/ml was injected at a 0.07 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 25°C. Three successive 620 second frames were collected through the SEC elution. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted from data frames measured from the sample collected through the SEC-elution peak.

Tumor necrosis factor receptor superfamily member 5 (CD40)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   19.2 kDa
 
UniProt   P25942 (21-193)
Sequence   FASTA
 
Human 341G2 F(ab)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   73.3 kDa
Sequence   FASTA