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11 hits found for Matrix protein

SASDJ92 – ...matrix binding protein (Embp) F-repeats

Extracellular matrix binding protein F-repeats experimental SAS data
SASREF model
Sample: ...matrix binding protein F-repeats , 70 kDa Staphylococcus epidermidis protein
Buffer: 50 mM MES, 150 mM NaCl, pH: 6
Experiment: SAXS data collected at EMBL X33, DORIS III, DESY on 2011 Dec 15
...Matrix Binding Protein of Staphylococcus epidermidis Binds Surface-Immobilized Fibronectin via a Novel Mechanism. mBio 11(5) (2020)
Büttner H, Perbandt M, Kohler T, Kikhney A, Wolters M, Christner M, Heise M, Wilde J, Weißelberg S, Both A, Betzel C, Hammerschmidt S, Svergun D, Aepfelbacher M, Rohde H
RgGuinier 7.0 nm
Dmax 28.0 nm

SASDJA2 – ...matrix binding protein (Embp) FG-repeats

Extracellular matrix binding protein FG-repeats experimental SAS data
EOM/RANCH model
Sample: ...matrix binding protein FG-repeats , 85 kDa Staphylococcus epidermidis protein
Buffer: PBS, 136.5 mM NaCl, 2.65 mM KCl, 8.3 mM Na2HPO4, 2.65 mM KH2PO4, pH: 7.4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Jun 14
...Matrix Binding Protein of Staphylococcus epidermidis Binds Surface-Immobilized Fibronectin via a Novel Mechanism. mBio 11(5) (2020)
Büttner H, Perbandt M, Kohler T, Kikhney A, Wolters M, Christner M, Heise M, Wilde J, Weißelberg S, Both A, Betzel C, Hammerschmidt S, Svergun D, Aepfelbacher M, Rohde H
RgGuinier 10.7 nm
Dmax 40.0 nm

SASDKN2Matrix protein from Newcastle disease virus at neutral pH

Matrix protein experimental SAS data
DAMMIN model
Sample: Matrix protein , 40 kDa Newcastle disease virus … protein
Buffer: STE buffer 100 mM NaCl, 10 mM Tris-HCl, and 1 mM EDTA, pH: 4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Dec 11
...Matrix Protein from Newcastle Disease Virus at Neutral and Acidic pH Journal of Virology 93(6) (2019)
Shtykova E, Petoukhov M, Dadinova L, Fedorova N, Tashkin V, Timofeeva T, Ksenofontov A, Loshkarev N, Baratova L, Jeffries C, Svergun D, Batishchev O, García-Sastre A
RgGuinier 3.5 nm

SASDKP2Matrix protein from Newcastle disease virus at acidic pH

Matrix protein experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Matrix protein dimer, 79 kDa Newcastle disease virus … protein
Buffer: STE buffer 100 mM NaCl, 10 mM Tris-HCl, and 1 mM EDTA, pH: 4
Experiment: SAXS data collected at EMBL P12, PETRA III on 2013 Dec 11
...Matrix Protein from Newcastle Disease Virus at Neutral and Acidic pH Journal of Virology 93(6) (2019)
Shtykova E, Petoukhov M, Dadinova L, Fedorova N, Tashkin V, Timofeeva T, Ksenofontov A, Loshkarev N, Baratova L, Jeffries C, Svergun D, Batishchev O, García-Sastre A
RgGuinier 3.3 nm

SASDFM4Matrix metalloproteinase-1 (MMP-1)

Matrix metalloproteinase-1 (Interstitial collagenase) experimental SAS data
Matrix metalloproteinase-1 (Interstitial collagenase) Kratky plot
Sample: Matrix metalloproteinase-1 (Interstitial collagenase) monomer, 43 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 150 mM Sodium chloride, 10 mM Calcium chloride, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2016 May 14
...matrix metalloproteinase-1
Rob Holland
RgGuinier 2.6 nm
Dmax 8.3 nm
VolumePorod 50 nm3

SASDFN4 – ...Matrix metalloproteinase-1 (MMP-1 S243C, S318C)

Matrix metalloproteinase-1 (Interstitial collagenase) (S243C, S318C) experimental SAS data
Matrix metalloproteinase-1 (Interstitial collagenase) (S243C, S318C) Kratky plot
Sample: Matrix metalloproteinase-1 (Interstitial collagenase) (S243C, S318C) monomer, 43 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 150 mM Sodium chloride, 10 mM Calcium chloride, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2016 May 14
...matrix metalloproteinase-1
Rob Holland
RgGuinier 2.6 nm
Dmax 7.7 nm
VolumePorod 43 nm3

SASDFP4 – ...matrix metalloproteinase-1 (MMP-1)

Pro-matrix metalloproteinase-1 (Interstitial collagenase) experimental SAS data
Pro-matrix metalloproteinase-1 (Interstitial collagenase) Kratky plot
Sample: ...matrix metalloproteinase-1 (Interstitial collagenase) monomer, 52 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 150 mM Sodium chloride, 10 mM Calcium chloride, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2015 May 21
...matrix metalloproteinase-1
Rob Holland
RgGuinier 2.7 nm
Dmax 9.0 nm
VolumePorod 73 nm3

SASDFQ4 – ...Matrix metalloproteinase-1 (proMMP-1 S243C, S318C)

Pro-matrix metalloproteinase-1 (Interstitial collagenase) (proMMP-1 S243C, S318C) experimental SAS data
Pro-matrix metalloproteinase-1 (Interstitial collagenase) (proMMP-1 S243C, S318C) Kratky plot
Sample: ...matrix metalloproteinase-1 (Interstitial collagenase) (proMMP-1 S243C, S318C) monomer, 52 kDa Homo sapiens protein
Buffer: 50 mM Tris-HCl, 150 mM Sodium chloride, 10 mM Calcium chloride, pH: 7.4
Experiment: SAXS data collected at B21, Diamond Light Source on 2015 May 21
...matrix metalloproteinase-1
Rob Holland
RgGuinier 2.7 nm
Dmax 8.9 nm
VolumePorod 61 nm3

SASDN78 – Pikachurin N-terminal FnIII(1-2) fragment (SEC-SAXS)

Pikachurin N-terminal FnIII(1-2) domains experimental SAS data
GASBOR model
Sample: Pikachurin N-terminal FnIII(1-2) domains monomer, 25 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Mar 3
...matrix protein pikachurin with the orphan receptor GPR179 Science Signaling 16(795) (2023)
Patil D, Pantalone S, Cao Y, Laboute T, Novick S, Singh S, Savino S, Faravelli S, Magnani F, Griffin P, Singh A, Forneris F, Martemyanov K
RgGuinier 3.4 nm
Dmax 16.4 nm
VolumePorod 44 nm3

SASDN68 – Pikachurin C-terminal LG3 domain (SEC-SAXS)

Pikachurin experimental SAS data
GASBOR model
Sample: Pikachurin monomer, 22 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Mar 3
...matrix protein pikachurin with the orphan receptor GPR179 Science Signaling 16(795) (2023)
Patil D, Pantalone S, Cao Y, Laboute T, Novick S, Singh S, Savino S, Faravelli S, Magnani F, Griffin P, Singh A, Forneris F, Martemyanov K
RgGuinier 2.2 nm
Dmax 8.2 nm
VolumePorod 48 nm3

SASDN88 – Pikachurin C-terminal EGF-LG3 fragment (SEC-SAXS)

Pikachurin experimental SAS data
GASBOR model
Sample: Pikachurin monomer, 26 kDa Homo sapiens protein
Buffer: 25 mM HEPES, 200 mM NaCl, pH: 8
Experiment: SAXS data collected at B21, Diamond Light Source on 2019 Mar 3
...matrix protein pikachurin with the orphan receptor GPR179 Science Signaling 16(795) (2023)
Patil D, Pantalone S, Cao Y, Laboute T, Novick S, Singh S, Savino S, Faravelli S, Magnani F, Griffin P, Singh A, Forneris F, Martemyanov K
RgGuinier 2.3 nm
Dmax 7.4 nm
VolumePorod 52 nm3