Structural variability of EspG chaperones from mycobacterial ESX-1, ESX-3 and ESX-5 type VII secretion systems

Tuukkanen A, Freire D, Chan S, Arbing M, Reed R, Evans T, ZenkeviciutÄ— G, Kim J, Kahng S, Sawaya M, Chaton C, Wilmanns M, Eisenberg D, Parret A, Korotkov K, (2018) DOI

SASDDW2 – EspG5-PE25/PPE41 complex from M. tuberculosis

EspG5 chaperone from Mycobacterium tuberculosis
PE25 from Mycobacterium tuberculosis
PPE41 from Mycobacterium tuberculosis
MWexperimental 76 kDa
MWexpected 65 kDa
log I(s) 1.32×104 1.32×103 1.32×102 1.32×101
EspG5 chaperone from Mycobacterium tuberculosis PE25 from Mycobacterium tuberculosis PPE41 from Mycobacterium tuberculosis small angle scattering data  s, nm-1
ln I(s)
EspG5 chaperone from Mycobacterium tuberculosis PE25 from Mycobacterium tuberculosis PPE41 from Mycobacterium tuberculosis Guinier plot ln 1.32×104 Rg: 4.0 nm 0 (4.0 nm)-2 s2
(sRg)2I(s)/I(0)
EspG5 chaperone from Mycobacterium tuberculosis PE25 from Mycobacterium tuberculosis PPE41 from Mycobacterium tuberculosis Kratky plot 1.104 0 3 sRg
p(r)
EspG5 chaperone from Mycobacterium tuberculosis PE25 from Mycobacterium tuberculosis PPE41 from Mycobacterium tuberculosis pair distance distribution function Rg: 4.0 nm 0 Dmax: 13.0 nm

Data validation


Fits and models


log I(s)
 s, nm-1

Synchrotron SAXS data from solutions of EspG5-PE25/PPE41 complex from M. tuberculosis in 20 mM HEPES pH 7.5, 150 mM NaCl, pH 7.5 were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY; Hamburg, Germany) using a Pilatus 2M detector at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 0.48 mg/ml was measured. 20 successive 0.050 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Cell temperature = UNKNOWN. Storage temperature = UNKNOWN. Sample detector distance = UNKNOWN

EspG5 chaperone from Mycobacterium tuberculosis (EspG5Mtb)
Mol. type   Protein
Organism   Mycobacterium tuberculosis
Olig. state   Monomer
Mon. MW   32.4 kDa
 
UniProt   O53943
Sequence   FASTA
 
PE25 from Mycobacterium tuberculosis (PE25)
Mol. type   Protein
Organism   Mycobacterium tuberculosis
Olig. state   Monomer
Mon. MW   10.7 kDa
Sequence   FASTA
 
PPE41 from Mycobacterium tuberculosis (PPE41)
Mol. type   Protein
Organism   Mycobacterium tuberculosis
Olig. state   Monomer
Mon. MW   21.9 kDa
 
UniProt   Q79FE1
Sequence   FASTA