Structural plasticity of the coiled-coil interactions in human SFPQ.

Koning HJ, Lai JY, Marshall AC, Stroeher E, Monahan G, Pullakhandam A, Knott GJ, Ryan TM, Fox AH, Whitten A, Lee M, Bond CS, Nucleic Acids Res (2024) Europe PMC

SASDMW7 – Concentration dependent dimer-tetramer transition of splicing factor, proline- and glutamine-rich with Non-POU domain-containing octamer-binding protein (SFPQ276-565/NONO53-312)

Splicing factor, proline- and glutamine-rich (276-565)
Non-POU domain-containing octamer-binding protein (53-312)
MWexperimental 64 kDa
MWexpected 64 kDa
VPorod 102 nm3
log I(s) 1.94×10-2 1.94×10-3 1.94×10-4 1.94×10-5
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) small angle scattering data  s, nm-1
ln I(s)
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) Guinier plot ln 1.94×10-2 Rg: 3.0 nm 0 (3.0 nm)-2 s2
(sRg)2I(s)/I(0)
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) Kratky plot 1.104 0 3 sRg
p(r)
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) pair distance distribution function Rg: 3.1 nm 0 Dmax: 12.7 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Splicing factor, proline- and glutamine-rich (276-565) Non-POU domain-containing octamer-binding protein (53-312) PDB (PROTEIN DATA BANK) model

Synchrotron SAXS data from solutions of SFPQ276-565/NONO53-312 in 20 mM Tris pH 7.5, 250 mM NaCl, were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus3 S 2M detector at a wavelength of λ = 0.10781 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 0.32 mg/ml was measured at 25°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The primary data for this entry shows the SAXS profile of the dimeric form of SFPQ276-565/NONO53-312 that occurs at low protein concentrations (~0.32 mg/ml). At higher sample concentrations, the protein undergoes a concentration dependent self-association into a tetramer as is showcased by a change in scattering and structure. We are aware of this phenomenon because of a cysteine mutated construct (also deposited) which constitutively forms tetramers and previous experiments in the literature. The full concentration series data ranging up to 6.8mg/ml are made available in the full entry zip archive.

Splicing factor, proline- and glutamine-rich (276-565) (SFPQ276-565)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   34 kDa
 
UniProt   P23246-1 (276-565)
Sequence   FASTA
 
Non-POU domain-containing octamer-binding protein (53-312) (NONO (53-312))
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   30.1 kDa
 
UniProt   Q15233-1 (53-312)
Sequence   FASTA
 
PDB ID   6WMZ