A Dissection of Oligomerisation by the TRIM28 Tripartite Motif and the Interaction with Members of the Krab-ZFP Family.

Sun Y, Keown JR, Black MM, Raclot C, Demarais N, Trono D, Turelli P, Goldstone DC, J Mol Biol (2019) Europe PMC

SASDFT3 – Murine transcription intermediary factor 1-beta, TRIM28 RBCC assembly-null mutation R184D, complexed with the Krab domain of ZFP809 fused to an N-terminal MBP

Transcription intermediary factor 1-beta
Zinc finger protein 809 N-terminal MBP fusion
MWexperimental 138 kDa
MWexpected 134 kDa
VPorod 252 nm3
log I(s) 6.20×10-2 6.20×10-3 6.20×10-4 6.20×10-5
Transcription intermediary factor 1-beta Zinc finger protein 809 N-terminal MBP fusion small angle scattering data  s, nm-1
ln I(s)
Transcription intermediary factor 1-beta Zinc finger protein 809 N-terminal MBP fusion Guinier plot ln 6.20×10-2 Rg: 6.4 nm 0 (6.4 nm)-2 s2
(sRg)2I(s)/I(0)
Transcription intermediary factor 1-beta Zinc finger protein 809 N-terminal MBP fusion Kratky plot 1.104 0 3 sRg
p(r)
Transcription intermediary factor 1-beta Zinc finger protein 809 N-terminal MBP fusion pair distance distribution function Rg: 6.6 nm 0 Dmax: 22 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Transcription intermediary factor 1-beta Zinc finger protein 809 N-terminal MBP fusion GASBOR model

Synchrotron SAXS data from solutions of TRIM28 RBCC_R184D in complex with MBP-Krab ZFP809 in 10 mM Tris 300 mM NaCl 0.1 mM TCEP, pH 8 were collected using size-exclusion chromatography SAXS (SEC-SAXS) on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus 1M detector at a sample-detector distance of 3.3 m and at a wavelength of λ = 0.113 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). SEC-SAXS was performed at 16 °C using the GE-Healthcare S200 5/150 analytical SEC column at a flow rate of 0.5 mL/min. Two successive 50 μL samples were loaded at 1:1 RBCC to MBP-Krab and 1:1.5 RBCC to MBP-Krab molar ratios, at concentrations of 11.2 and 14.3 mg/mL, respectively. The data were collected through the SEC peaks of each individual run as a series of 48 x 1 second exposures . The data were normalized to the intensity of the transmitted beam and radially averaged and the the scattering of an appropriate solvent-blank was subtracted. Both samples yielded identical scattering curves after buffer subtraction and therefore have been scaled and merged to generate the final SAXS profile displayed in this entry.

Storage temperature = UNKNOWN. SEC column = UNKNOWN. Sample injection volume = UNKNOWN. Flow rate = UNKNOWN

Transcription intermediary factor 1-beta (TRIM28)
Mol. type   Protein
Organism   Mus musculus
Olig. state   Dimer
Mon. MW   40.9 kDa
 
UniProt   Q62318 (58-418)
Sequence   FASTA
 
Zinc finger protein 809 N-terminal MBP fusion (MBP-ZFP809)
Mol. type   Protein
Organism   Mus musculus
Olig. state   Monomer
Mon. MW   52.1 kDa
 
UniProt   G3X9G7 (1-74)
Sequence   FASTA