Effect of the concentration of protein and nanoparticles on the structure of biohybrid nanocomposites.

Majorošová J, Schroer MA, Tomašovičová N, Batková M, Hu PS, Kubovčíková M, Svergun DI, Kopčanský P, Biopolymers 111(2):e23342 (2020) Europe PMC

SASDMJ4 – Lysozyme amyloid fibril (LAF)

lysozyme amyloid fibril
MWexperimental 1 kDa
MWexpected 14 kDa
log I(s) 3.62×105 3.62×104 3.62×103 3.62×102
lysozyme amyloid fibril small angle scattering data  s, nm-1
ln I(s)
lysozyme amyloid fibril Guinier plot ln 3.63×105 Rg: 30.2 nm 0 (30.2 nm)-2 s2
(sRg)2I(s)/I(0)
lysozyme amyloid fibril Kratky plot 1.104 0 3 sRg
p(r)
lysozyme amyloid fibril pair distance distribution function Rg: 34.4 nm 0 Dmax: 120 nm

Data validation


Fits and models


log I(s)
 s, nm-1
lysozyme amyloid fibril DAMMIF model

Synchrotron SAXS data from solutions of Lysozyme amyloid fibril (LAF) in 0.2 M glycine-HCl, 80 mM NaCl, pH 2.2 were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY; Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 4.2 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 5.00 mg/ml was measured at 20°C. 20 successive 0.100 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

HEWL powder was dissolved in 0.2 M glycine-hydrochloric acid buffer (pH = 2.2) to form amyloid fibril solutions. These basic solutions were addedwith 80 mM NaCl. To induce the process of fibrillization, the prepared solutions were heated for 2 hours at 65 °C under constant stirring of 1200 rounds per minute. In air SAXS measurement. Temperature controlled capillary holder. The Guinier range of the SAXS profile cannot be resolved within the angular range at E = 10 keV and sample-detector distance of 4.17 m.

Tags: softmatter
lysozyme amyloid fibril (LAF)
Mol. type   Protein
Organism   Gallus gallus
Olig. state   Unknown
Mon. MW   14.3 kDa
 
UniProt   P00698 (19-147)
Sequence   FASTA