Small Angle Scattering Biological Data Bank SASBDB


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37 hits found for Bennett

SASDTZ9 – HIV-1 Envelope Glycoprotein SOSIP from a CH505 isolate 53 weeks post-infection at 25 °C

CH505TFchim.6R.SOSIP.664 Env glycoprotein experimental SAS data

CH505TFchim.6R.SOSIP.664 Env glycoprotein Kratky plot

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2017 Jun 1

Microsecond dynamics control the HIV-1 Envelope conformation. Sci Adv 10(5):eadj0396 (2024)
Bennett AL, Edwards R, Kosheleva I, Saunders C, Bililign Y, Williams A, Bubphamala P, Manosouri K, Anasti K, Saunders KO, Alam SM, Haynes BF, Acharya P, Henderson R

R_g^Guinier	5.4	nm
D_max	16.7	nm
Volume^Porod	768	nm³

SASDU22 – HIV-1 Envelope Glycoprotein SOSIP from a CH505 isolate 78 weeks post-infection at 25 °C

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2017 Jun 1

R_g^Guinier	5.1	nm
D_max	16.0	nm
Volume^Porod	709	nm³

SASDU32 – HIV-1 Envelope Glycoprotein SOSIP from a CH505 isolate 100 weeks post-infection at 25 °C

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2017 Jun 1

R_g^Guinier	5.2	nm
D_max	17.2	nm
Volume^Porod	770	nm³

SASDU42 – HIV-1 Envelope Glycoprotein SOSIP from a BG505 isolate containing T332N mutation at 25 °C

BG505SOSIP.664T332N Env glycoprotein experimental SAS data

BG505SOSIP.664T332N Env glycoprotein Kratky plot

Sample:	BG505SOSIP.664T332N Env glycoprotein trimer, 213 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2017 Jun 1

R_g^Guinier	5.0	nm
D_max	20.7	nm
Volume^Porod	712	nm³

SASDMG4 – Arrestin-3 ERK2 fusion, monomer (Arrestin-3 fused to extracellular signal-regulated kinase 2)

Arrestin-3 fused to extracellular signal-regulated kinase 2 experimental SAS data

Arrestin-3 ERK2 fusion, monomer (Arrestin-3 fused to extracellular signal-regulated kinase 2) Rg histogram

Sample:	Arrestin-3 fused to extracellular signal-regulated kinase 2 monomer, 89 kDa Bos taurus/Rattus norvegicus protein
Buffer:	20 mM MOPS pH 7.5, 150 mM NaCl, 1 mM TCEP, and 5% glycerol, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2019 Mar 23

The two non-visual arrestins engage ERK2 differently. J Mol Biol :167465 (2022)
...Bennett Hopkins J, Zhuo Y, Zheng C, Perez I, Schultz KM, Vishnivetskiy SA, Kaya AI, Sharma P, Dalby KN, Young Chung K, Klug CS, Gurevich VV, Iverson TM

R_g^Guinier	3.6	nm
D_max	14.0	nm

SASDMH4 – Arrestin-3 ERK2 fusion, dimer (Arrestin-3 fused to extracellular signal-regulated kinase 2)

Arrestin-3 fused to extracellular signal-regulated kinase 2 Kratky plot

Sample:	Arrestin-3 fused to extracellular signal-regulated kinase 2 dimer, 178 kDa Bos taurus/Rattus norvegicus protein
Buffer:	20 mM MOPS pH 7.5, 150 mM NaCl, 1 mM TCEP, and 5% glycerol, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2019 Mar 23

R_g^Guinier	4.3	nm
D_max	16.0	nm

SASDT29 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate at 25 °C

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 27

R_g^Guinier	4.6	nm
D_max	15.5	nm
Volume^Porod	705	nm³

SASDT39 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate at 35 °C

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 27

R_g^Guinier	4.6	nm
D_max	15.4	nm
Volume^Porod	704	nm³

SASDT49 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate at 44 °C

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 27

R_g^Guinier	4.6	nm
D_max	15.6	nm
Volume^Porod	702	nm³

SASDT59 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate at 50 °C

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 29

R_g^Guinier	4.6	nm
D_max	15.6	nm
Volume^Porod	699	nm³

SASDT69 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 1.5 µs post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 30

R_g^Guinier	4.6	nm
D_max	15.5	nm
Volume^Porod	706	nm³

SASDT79 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 3 µs post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 30

R_g^Guinier	4.6	nm
D_max	15.5	nm
Volume^Porod	706	nm³

SASDT89 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 5 µs post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 30

R_g^Guinier	4.6	nm
D_max	15.5	nm
Volume^Porod	706	nm³

SASDT99 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 10 µs post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 28

R_g^Guinier	4.3	nm
D_max	15.3	nm
Volume^Porod	729	nm³

SASDTA9 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 50 µs post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 28

R_g^Guinier	4.3	nm
D_max	15.4	nm
Volume^Porod	729	nm³

SASDTB9 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 100 µs post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 28

R_g^Guinier	4.3	nm
D_max	15.3	nm
Volume^Porod	730	nm³

SASDTC9 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 500 µs post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 28

R_g^Guinier	4.3	nm
D_max	15.3	nm
Volume^Porod	728	nm³

SASDTD9 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 1 ms (20 Hz) post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 28

R_g^Guinier	4.3	nm
D_max	15.3	nm
Volume^Porod	742	nm³

SASDTE9 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 1 ms (5 Hz) post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 29

R_g^Guinier	4.1	nm
D_max	15.4	nm
Volume^Porod	706	nm³

SASDTF9 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 10 ms post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 29

R_g^Guinier	4.1	nm
D_max	15.4	nm
Volume^Porod	706	nm³

SASDTG9 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate 100 ms post temperature jump (44 °C - 50 °C)

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jul 29

R_g^Guinier	4.1	nm
D_max	15.5	nm
Volume^Porod	706	nm³

SASDTH9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate at 30 °C

CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein experimental SAS data

CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein Kratky plot

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 28

R_g^Guinier	4.1	nm
D_max	15.3	nm
Volume^Porod	768	nm³

SASDTJ9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate at 35 °C

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 28

R_g^Guinier	5.3	nm
D_max	15.3	nm
Volume^Porod	765	nm³

SASDTK9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate at 40 °C

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 28

R_g^Guinier	5.3	nm
D_max	15.3	nm
Volume^Porod	764	nm³

SASDTL9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate at 44 °C

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 28

R_g^Guinier	5.2	nm
D_max	15.2	nm
Volume^Porod	728	nm³

SASDTM9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 5 µs post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.1	nm
Volume^Porod	750	nm³

SASDTN9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 10 µs post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.1	nm
Volume^Porod	750	nm³

SASDTP9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 50 µs post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.1	nm
Volume^Porod	752	nm³

SASDTQ9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 100 µs post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.1	nm
Volume^Porod	755	nm³

SASDTR9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 250 µs post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.3	nm
Volume^Porod	741	nm³

SASDTS9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 500 µs post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.1	nm
Volume^Porod	750	nm³

SASDTT9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 750 µs post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.3	nm
Volume^Porod	739	nm³

SASDTU9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 1 ms post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.1	nm
Volume^Porod	751	nm³

SASDTV9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 10 ms post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.5	nm
Volume^Porod	733	nm³

SASDTW9 – HIV-1 Envelope Glycoprotein SOSIP from the CH848 isolate 100 ms post temperature jump (44 °C - 50 °C)

Sample:	CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 Env glycoprotein trimer, 211 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 14-ID-B (BioCARS), Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 30

R_g^Guinier	5.3	nm
D_max	15.3	nm
Volume^Porod	732	nm³

SASDTX9 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate including the 4.1 stabilization mutations at 25 °C

CH505TF.6R.SOSIP.664.v4.1 Env glycoprotein experimental SAS data

CH505TF.6R.SOSIP.664.v4.1 Env glycoprotein Kratky plot

Sample:	CH505TF.6R.SOSIP.664.v4.1 Env glycoprotein trimer, 218 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2017 Jun 1

R_g^Guinier	5.1	nm
D_max	18.2	nm
Volume^Porod	718	nm³

SASDTY9 – HIV-1 Envelope Glycoprotein SOSIP from a transmitted founder virus of the CH505 isolate at 25 °C

Sample:	CH505TFchim.6R.SOSIP.664 Env glycoprotein trimer, 217 kDa HIV-1 group M protein
Buffer:	15 mM HEPES, 150 mM NaCl, pH: 7.1
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2017 Jun 1

R_g^Guinier	5.3	nm
D_max	16.1	nm
Volume^Porod	731	nm³

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