Small Angle Scattering Biological Data Bank SASBDB

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Search In:	Molecules type, name, organism or UniProt ID e.g. RNA, lysozyme, Human, V2JZU2 Samples title given by the contributor e.g. TIP5 in Tris Buffers were the molecule is dissolved e.g. HEPES, Tris Curves title or type or SASBDB ID e.g. merged, SASDAU4 Models type or software used to compute it, PDB id e.g. SASREF, atomic, 1lyz Instruments type or name e.g. synchrotron, PETRA III Detector brand or type e.g. Pilatus, 2M, gas detector Experiment date – when was the data collected e.g. Sept. 18 2012 Contributor – name of the person who deposited the data e.g. Konarev Affiliations of the contributor e.g. EMBL-Hamburg Projects title given by the contributor e.g. standard proteins Publications author, journal or PMID e.g. Brown, Nucleic Acids Res, 22896701 Select one or multiple fields to restrict your search. If none is selected the search will be in every field.

9 hits found for vish

SASDPM4 – Apo SH2-SH3-SH2 domains from p120RasGAP

Ras GTPase-activating protein 1 experimental SAS data

DAMMIF model

Sample:	Ras GTPase-activating protein 1 monomer, 101 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8 350 mM NaCl 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Dec 12

Tandem engagement of phosphotyrosines by the dual SH2 domains of p120RasGAP. Structure (2022)
...Vish KJ, Boggon TJ

R_g^Guinier	2.6	nm
D_max	10.3	nm
Volume^Porod	41	nm³

SASDPN4 – Doubly Phosphorylated p190RhoGAP Peptide Bound to p120RasGAP's SH2-SH3-SH2 Domains

Ras GTPase-activating protein 1Rho GTPase-activating protein 35 experimental SAS data

DAMMIF model

Sample:	Ras GTPase-activating protein 1 monomer, 101 kDa Homo sapiens protein Rho GTPase-activating protein 35 monomer, 3 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8 350 mM NaCl 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Dec 11

Tandem engagement of phosphotyrosines by the dual SH2 domains of p120RasGAP. Structure (2022)
...Vish KJ, Boggon TJ

R_g^Guinier	2.4	nm
D_max	7.9	nm
Volume^Porod	41	nm³

SASDRJ6 – SH2-SH3-SH2 domains of Ras GTPase-activating protein 1 (p120RasGAP)

Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) experimental SAS data

Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) Kratky plot

Sample:	Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) monomer, 31 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8, 350 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Dec 12

Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP and Dok1 Journal of Biological Chemistry :105098 (2023)
Vish K, Stiegler A, Boggon T

R_g^Guinier	2.5	nm
D_max	9.8	nm
Volume^Porod	42	nm³

SASDRK6 – SH2-SH3-SH2 domains of Ras GTPase-activating protein 1 (p120RasGAP) bound to a doubly phosphorylated EphB4 peptide

Ephrin type-B receptor 4Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) experimental SAS data

Ephrin type-B receptor 4 Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) Kratky plot

Sample:	Ephrin type-B receptor 4 monomer, 2 kDa Homo sapiens protein Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) monomer, 31 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8, 350 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Dec 12

Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP and Dok1 Journal of Biological Chemistry :105098 (2023)
Vish K, Stiegler A, Boggon T

R_g^Guinier	2.7	nm
D_max	10.5	nm
Volume^Porod	44	nm³

SASDRL6 – SH2-SH3-SH2 domains of Ras GTPase-activating protein 1 (p120RasGAP) bound to a doubly phosphorylated p190RhoGAP peptide

Rho GTPase-activating protein 35Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) experimental SAS data

Rho GTPase-activating protein 35 Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) Kratky plot

Sample:	Rho GTPase-activating protein 35 monomer, 3 kDa Homo sapiens protein Ras GTPase-activating protein 1 (C236S, C261S, C372S, C402S) monomer, 31 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8, 350 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2020 Dec 12

Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP and Dok1 Journal of Biological Chemistry :105098 (2023)
Vish K, Stiegler A, Boggon T

R_g^Guinier	2.4	nm
D_max	7.7	nm
Volume^Porod	44	nm³

SASDRE6 – Ras GTPase-activating protein 1 (p120RasGAP, amino acids 174–1047)

Ras GTPase-activating protein 1 experimental SAS data

ALPHAFOLD model

Sample:	Ras GTPase-activating protein 1 monomer, 101 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Nov 4

Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP and Dok1 Journal of Biological Chemistry :105098 (2023)
Vish K, Stiegler A, Boggon T

R_g^Guinier	4.0	nm
D_max	14.0	nm
Volume^Porod	172	nm³

SASDRF6 – Ras GTPase-activating protein 1 (p120RasGAP, amino acids 174–1047) bound to doubly phosphorylated EphB4 peptide

Ephrin type-B receptor 4Ras GTPase-activating protein 1 experimental SAS data

Ephrin type-B receptor 4 Ras GTPase-activating protein 1 Kratky plot

Sample:	Ephrin type-B receptor 4 monomer, 2 kDa Homo sapiens protein Ras GTPase-activating protein 1 monomer, 101 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Nov 4

Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP and Dok1 Journal of Biological Chemistry :105098 (2023)
Vish K, Stiegler A, Boggon T

R_g^Guinier	3.9	nm
D_max	13.7	nm
Volume^Porod	176	nm³

SASDRG6 – Ras GTPase-activating protein 1 (p120RasGAP, amino acids 174–1047) bound to doubly phosphorylated p190RhoGAP peptide

Rho GTPase-activating protein 35Ras GTPase-activating protein 1 experimental SAS data

Rho GTPase-activating protein 35 Ras GTPase-activating protein 1 Kratky plot

Sample:	Rho GTPase-activating protein 35 monomer, 3 kDa Homo sapiens protein Ras GTPase-activating protein 1 monomer, 101 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Nov 4

Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP and Dok1 Journal of Biological Chemistry :105098 (2023)
Vish K, Stiegler A, Boggon T

R_g^Guinier	4.0	nm
D_max	15.1	nm
Volume^Porod	194	nm³

SASDRH6 – Ras GTPase-activating protein 1 (p120RasGAP, amino acids 174–1047) bound to a doubly phosphorylated Dok1 peptide

Ras GTPase-activating protein 1Docking protein 1 experimental SAS data

Ras GTPase-activating protein 1 Docking protein 1 Kratky plot

Sample:	Ras GTPase-activating protein 1 monomer, 101 kDa Homo sapiens protein Docking protein 1 monomer, 3 kDa Homo sapiens protein
Buffer:	20 mM Tris pH 8, 150 mM NaCl, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2021 Nov 4

Diverse p120RasGAP interactions with doubly phosphorylated partners EphB4, p190RhoGAP and Dok1 Journal of Biological Chemistry :105098 (2023)
Vish K, Stiegler A, Boggon T

R_g^Guinier	4.0	nm
D_max	14.6	nm
Volume^Porod	196	nm³