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35
hits found for
Kachala
SASDEH2
– Unlabeled nucleoporin NUP49/NSP49 (N49) without denaturant
Sample:
Nucleoporin NUP49/NSP49 monomer, 4 kDa
Saccharomyces cerevisiae
protein
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Dec 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
1.6
nm
D
max
6.0
nm
Volume
Porod
4
nm
3
SASDEJ2
– Labeled nucleoporin NUP49/NSP49 (N49-Alexa488/Alexa594) without denaturant
Sample:
Nucleoporin NUP49/NSP49 monomer, 4 kDa
Saccharomyces cerevisiae
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Dec 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
1.9
nm
D
max
6.5
nm
Volume
Porod
12
nm
3
SASDEK2
– Unlabeled nucleoporin NUP49/NSP49 (N49) with denaturant
Sample:
Nucleoporin NUP49/NSP49 monomer, 4 kDa
Saccharomyces cerevisiae
protein
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Dec 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
1.7
nm
D
max
6.5
nm
Volume
Porod
4
nm
3
SASDEL2
– Labeled nucleoporin NUP49/NSP49 (N49-Alexa488/Alexa594) with denaturant
Sample:
Nucleoporin NUP49/NSP49 monomer, 4 kDa
Saccharomyces cerevisiae
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Nov 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.1
nm
D
max
7.7
nm
Volume
Porod
7
nm
3
SASDEM2
– Unlabeled Nuclear Localization Signal (NLS) from the inner nuclear membrane protein HEH2 without denaturant
Sample:
Inner nuclear membrane protein HEH2 monomer, 5 kDa
Saccharomyces cerevisiae
protein
Buffer:
25 mM HEPES, 150 mM NaCl, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2014 Jan 25
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.4
nm
D
max
11.6
nm
Volume
Porod
16
nm
3
SASDEN2
– Labeled Nuclear Localization Signal from the inner nuclear membrane protein HEH2 (NLS-Alexa488/Alexa594) without denaturant
Sample:
Inner nuclear membrane protein HEH2 monomer, 5 kDa
Saccharomyces cerevisiae
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
25 mM HEPES, 150 mM NaCl, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2014 Jan 25
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.0
nm
D
max
7.3
nm
Volume
Porod
10
nm
3
SASDEP2
– Unlabeled Nuclear Localization Signal (NLS) from the inner nuclear membrane protein HEH2 with denaturant
Sample:
Inner nuclear membrane protein HEH2 monomer, 5 kDa
Saccharomyces cerevisiae
protein
Buffer:
25 mM HEPES, 150 mM NaCl, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2014 Jan 25
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.3
nm
D
max
7.1
nm
Volume
Porod
10
nm
3
SASDEQ2
– Labeled Nuclear Localization Signal from the inner nuclear membrane protein HEH2 (NLS-Alexa488/Alexa594) with denaturant
Sample:
Inner nuclear membrane protein HEH2 monomer, 5 kDa
Saccharomyces cerevisiae
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
25 mM HEPES, 150 mM NaCl, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2014 Jan 25
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.4
nm
D
max
8.1
nm
Volume
Porod
12
nm
3
SASDER2
– Unlabeled Importin Beta Binding domain (IBB) from importin subunit alpha-1 without denaturant
Sample:
Importin subunit alpha-1 monomer, 11 kDa
Homo sapiens
protein
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Dec 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.2
nm
D
max
11.5
nm
Volume
Porod
30
nm
3
SASDES2
– Labeled Importin Beta Binding Domain (IBB-Alexa488/Alexa594) from importin subunit alpha-1 without denaturant
Sample:
Importin subunit alpha-1 monomer, 11 kDa
Homo sapiens
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Dec 9
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.9
nm
D
max
13.7
nm
Volume
Porod
29
nm
3
SASDET2
– Unlabeled Importin Beta Binding Domain (IBB) from importin subunit alpha-1 with denaturant
Sample:
Importin subunit alpha-1 monomer, 11 kDa
Homo sapiens
protein
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 15
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.1
nm
D
max
15.3
nm
Volume
Porod
34
nm
3
SASDEU2
– Labeled Importin Beta Binding Domain from importin subunit alpha-1 (IBB-Alexa488/Alexa594) with denaturant
Sample:
Importin subunit alpha-1 monomer, 11 kDa
Homo sapiens
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 15
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.2
nm
D
max
13.3
nm
Volume
Porod
29
nm
3
SASDEV2
– Unlabeled nuclear pore complex protein Nup153 (NUS) without denaturant
Sample:
Nuclear pore complex protein Nup153 monomer, 8 kDa
Homo sapiens
protein
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Nov 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.5
nm
D
max
9.2
nm
Volume
Porod
15
nm
3
SASDEW2
– Labeled nuclear pore complex protein Nup153 (NUS-Alexa488/Alexa594) without denaturant
Sample:
Nuclear pore complex protein Nup153 monomer, 8 kDa
Homo sapiens
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Nov 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.5
nm
D
max
9.7
nm
Volume
Porod
17
nm
3
SASDEX2
– Unlabeled nuclear pore complex protein Nup153 (NUS) with denaturant
Sample:
Nuclear pore complex protein Nup153 monomer, 8 kDa
Homo sapiens
protein
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 15
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.1
nm
D
max
11.0
nm
Volume
Porod
26
nm
3
SASDEY2
– Labeled nuclear pore complex protein Nup153 (NUS-Alexa488/Alexa594) with denaturant
Sample:
Nuclear pore complex protein Nup153 monomer, 8 kDa
Homo sapiens
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 15
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.9
nm
D
max
10.8
nm
Volume
Porod
19
nm
3
SASDEZ2
– Unlabeled nuclear pore complex protein Nup153 (NUL) without denaturant
Sample:
Nuclear pore complex protein Nup153 monomer, 12 kDa
Homo sapiens
protein
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Nov 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.0
nm
D
max
10.9
nm
Volume
Porod
32
nm
3
SASDE23
– Labeled nuclear pore complex protein Nup153 (NUL-Alexa488/Alexa594) without denaturant
Sample:
Nuclear pore complex protein Nup153 monomer, 12 kDa
Homo sapiens
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Nov 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.1
nm
D
max
12.0
nm
Volume
Porod
24
nm
3
SASDE33
– Unlabeled nuclear pore complex protein Nup153 (NUL) with denaturant
Sample:
Nuclear pore complex protein Nup153 monomer, 12 kDa
Homo sapiens
protein
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Nov 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.5
nm
D
max
16.0
nm
Volume
Porod
53
nm
3
SASDE43
– Labeled nuclear pore complex protein Nup153 (NUL-Alexa488/Alexa594) with denaturant
Sample:
Nuclear pore complex protein Nup153 monomer, 12 kDa
Homo sapiens
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 15
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.2
nm
D
max
12.0
nm
Volume
Porod
27
nm
3
SASDE53
– Unlabeled dihydrolipoyllysine-residue succinyltransferase component (BBL) with denaturant
Sample:
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex monomer, 4 kDa
Escherichia coli
protein
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Nov 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.1
nm
D
max
8.3
nm
Volume
Porod
41
nm
3
SASDE63
– Labeled dihydrolipoyllysine-residue succinyltransferase component (BBL-Alexa488/Alexa594) with denaturant
Sample:
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex monomer, 4 kDa
Escherichia coli
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Nov 8
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.3
nm
D
max
10.7
nm
Volume
Porod
13
nm
3
SASDE73
– Unlabeled cold shock protein (CSP) with denaturant
Sample:
Cold shock-like protein monomer, 7 kDa
Thermotoga maritima
protein
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Mar 16
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.5
nm
D
max
11.5
nm
Volume
Porod
17
nm
3
SASDE83
– Labeled cold shock protein (CSP-Alexa488/Alexa594) with denaturant
Sample:
Cold shock-like protein monomer, 7 kDa
Thermotoga maritima
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 15
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.2
nm
D
max
8.3
nm
Volume
Porod
9
nm
3
SASDE93
– Unlabeled thioredoxin (TRX) with denaturant
Sample:
Thioredoxin 1 monomer, 12 kDa
Escherichia coli
protein
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 15
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.6
nm
D
max
13.0
nm
Volume
Porod
34
nm
3
SASDEA3
– Labeled thioredoxin (TRX-Alexa488/Alexa594) with denaturant
Sample:
Thioredoxin 1 monomer, 12 kDa
Escherichia coli
protein
Alexa Fluor™ 594 C5 Maleimide monomer, 1 kDa
Alexa Fluor™ 488 C5 Hydroxylamine monomer, 1 kDa
Buffer:
PBS, 10 mM DTT, 6 M urea, 0.3 M KCl, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 15
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
3.2
nm
D
max
13.9
nm
Volume
Porod
31
nm
3
SASDEB3
– Unlabeled nuclear pore complex protein Nup98-Nup96 (N98) without denaturant
Sample:
Nuclear pore complex protein Nup98-Nup96 monomer, 15 kDa
Homo sapiens
protein
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2015 Jun 24
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
2.9
nm
D
max
10.4
nm
Volume
Porod
27
nm
3
SASDEC3
– Unlabeled nucleoporin NSP1 (NSP) without denaturant
Sample:
Nucleoporin NSP1 monomer, 18 kDa
Saccharomyces cerevisiae
protein
Buffer:
PBS, 10 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2015 Jun 24
Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.
Proc Natl Acad Sci U S A
114(31):E6342-E6351 (2017)
...
Kachala
M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA
R
g
Guinier
4.1
nm
D
max
15.0
nm
Volume
Porod
45
nm
3
SASDB74
– CyaA Block I-V
Sample:
Adenylate cyclase toxin Block I-V monomer, 70 kDa
Bordetella pertussis
protein
Buffer:
10 mM Tris HCl 150 mM NaCl 10 mM CaCl2, pH: 8
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Oct 31
Calcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts.
Mol Cell
62(1):47-62 (2016)
...
Kachala
M, Svergun DI, Barinka C, Sebo P
R
g
Guinier
5.6
nm
D
max
17.2
nm
Volume
Porod
275
nm
3
SASDB84
– CyaA Block V
Sample:
Adenylate cyclase toxin Block V monomer, 16 kDa
Bordetella pertussis
protein
Buffer:
10 mM Tris HCl 150 mM NaCl 10 mM CaCl2, pH: 8
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Oct 31
Calcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts.
Mol Cell
62(1):47-62 (2016)
...
Kachala
M, Svergun DI, Barinka C, Sebo P
R
g
Guinier
1.8
nm
D
max
5.9
nm
Volume
Porod
24
nm
3
SASDAS4
– I27-PimA
Sample:
I27-PimA Fusion protein monomer, 48 kDa protein
Buffer:
50 mM Tris-HCl 150 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2014 May 17
Conformational plasticity of the essential membrane-associated mannosyltransferase PimA from mycobacteria.
J Biol Chem
288(41):29797-808 (2013)
...
Kachala
M, López-Fernández S, Svergun DI, Fernández JM, Guerin ME
R
g
Guinier
3.1
nm
D
max
10.7
nm
Volume
Porod
86
nm
3
SASDAG7
– CD44 HABD scFv MEM-85 complex
Sample:
Hyaluronate binding domain of CD44 antigen monomer, 18 kDa
Homo sapiens
protein
Single-chain Variable Fragment of Antibody MEM-85 monomer, 29 kDa
Mus musculus
protein
Buffer:
PBS, pH: 7.4
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Oct 31
Molecular mechanism for the action of the anti-CD44 monoclonal antibody MEM-85.
J Struct Biol
191(2):214-23 (2015)
...
Kachala
M, Fábry M, Bumba L, Svergun DI, Tošner Z, Veverka V, Řezáčová P
R
g
Guinier
2.7
nm
D
max
9.4
nm
Volume
Porod
57
nm
3
SASDCT8
– Uncharacterized protein CTHT_0072540 (Core) from Chaetomium thermophilum
Sample:
hypothetical protein CTHT_0072540 tetramer, 62 kDa
Chaetomium thermophilum
protein
Buffer:
20 mM HEPES, 100 mM NaCl, 2 mM β-mercaptoethanol, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jul 30
Prp19/Pso4 Is an Autoinhibited Ubiquitin Ligase Activated by Stepwise Assembly of Three Splicing Factors.
Mol Cell
69(6):979-992.e6 (2018)
...
Kachala
M, Svergun D, Urlaub H, Lührmann R, Pena V
R
g
Guinier
4.1
nm
D
max
16.2
nm
Volume
Porod
145
nm
3
SASDCU8
– Uncharacterized protein CTHT_0072540 (WD40) from Chaetomium thermophilum
Sample:
hypothetical protein CTHT_0072540 monomer, 35 kDa
Chaetomium thermophilum
protein
Buffer:
20 mM HEPES, 100 mM NaCl, 2 mM β-mercaptoethanol, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jul 19
Prp19/Pso4 Is an Autoinhibited Ubiquitin Ligase Activated by Stepwise Assembly of Three Splicing Factors.
Mol Cell
69(6):979-992.e6 (2018)
...
Kachala
M, Svergun D, Urlaub H, Lührmann R, Pena V
R
g
Guinier
2.3
nm
D
max
5.8
nm
Volume
Porod
68
nm
3
SASDCV8
– Uncharacterized protein CTHT_0072540 (Prp19 full-length) from Chaetomium thermophilum
Sample:
Full-length hypothetical protein CTHT_0072540 tetramer, 207 kDa
Chaetomium thermophilum
protein
Buffer:
20 mM HEPES, 100 mM NaCl, 2 mM β-mercaptoethanol, pH: 7.5
Experiment:
SAXS data collected at I911-4, MAX IV
on 2013 Oct 15
Prp19/Pso4 Is an Autoinhibited Ubiquitin Ligase Activated by Stepwise Assembly of Three Splicing Factors.
Mol Cell
69(6):979-992.e6 (2018)
...
Kachala
M, Svergun D, Urlaub H, Lührmann R, Pena V
R
g
Guinier
6.2
nm
D
max
23.0
nm
Volume
Porod
280
nm
3