Search

  
Advanced search  

13 hits found for Hall

SASDBG6 – Ribosome biogenesis protein 15 (Nop15)

Ribosome biogenesis protein 15 experimental SAS data
EOM/RANCH model
Sample: Ribosome biogenesis protein 15 monomer, 17 kDa Saccharomyces cerevisiae protein
Buffer: 25 mM HEPES, 500 mM NaCl, 2 mM DTT, pH: 7.5
Experiment: SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2013 Apr 25
Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate. Nucleic Acids Res 45(5):2829-2837 (2017)
...Hall TMT
RgGuinier 2.4 nm
Dmax 10.3 nm
VolumePorod 38 nm3

SASDW97 – Recombination directionality factor (6H-RdfS) from M.japonicum bound to 40mer DNA

Recombination directionality factor RdfSattP_8 40-mer DNA experimental SAS data
OTHER model
Sample: Recombination directionality factor RdfS tetramer, 52 kDa Mesorhizobium japonicum R7A protein
attP_8 40-mer DNA dimer, 25 kDa DNA
Buffer: 150 mM Tris-HCl, 300 mM NaCl, 5% v/v glycerol, pH: 7.4
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2019 Jun 19
Structural basis for control of integrative and conjugative element excision and transfer by the oligomeric winged helix–turn–helix protein RdfS Nucleic Acids Research 53(6) (2025)
...Hall D, Bond C, Ramsay J
RgGuinier 3.8 nm
Dmax 13.8 nm
VolumePorod 134 nm3

SASDNJ7 – Non-pre-microRNA stem loop 2 (NPSL2)

Non-pre-microRNA stem loop 2 experimental SAS data
PYMOL model
Sample: Non-pre-microRNA stem loop 2 monomer, 14 kDa Homo sapiens RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Feb 20
Solution structure of NPSL2, a regulatory element in the oncomiR-1 RNA. J Mol Biol :167688 (2022)
...Hall I, Keane SC
RgGuinier 2.0 nm
Dmax 7.7 nm
VolumePorod 15 nm3

SASDNM8 – Quorum sensing master protein (QseM)

DUF2285 domain-containing protein experimental SAS data
DUF2285 domain-containing protein Kratky plot
Sample: DUF2285 domain-containing protein monomer, 11 kDa Mesorhizobium loti protein
Buffer: 100 mM NaCl, 50 mM Tris-HCl, 2% glycerol, pH: 7.5
Experiment: SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2017 Dec 1
DUF2285 is a novel helix-turn-helix domain variant that orchestrates both activation and antiactivation of conjugative element transfer in proteobacteria. Nucleic Acids Res (2023)
...Hall DA, Sullivan JT, Fagerlund RD, Eto KY, Solomon PD, Mackay JP, Bond CS, Ramsay JP, Ronson CW
RgGuinier 1.5 nm
Dmax 5.7 nm
VolumePorod 15 nm3

SASDUS8 – HIV-1 DIS RNA with a CCCCCC apical loop (DIS-C)

HIV-1 dimerization initiation site with a CCCCCC apical loop experimental SAS data
RNAMASONRY model
Sample: HIV-1 dimerization initiation site with a CCCCCC apical loop monomer, 9 kDa RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Feb 20
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering. Structure (2025)
...Hall I, O'Neill HM, Keane SC
RgGuinier 1.5 nm
Dmax 4.6 nm
VolumePorod 11 nm3

SASDUT8 – HIV-1 DIS RNA with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension (DIS-Gk)

HIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension experimental SAS data
RNAMASONRY model
Sample: HIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension monomer, 21 kDa RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Feb 20
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering. Structure (2025)
...Hall I, O'Neill HM, Keane SC
RgGuinier 2.6 nm
Dmax 10.5 nm
VolumePorod 28 nm3

SASDUU8 – HIV-1 DIS-C:DIS-Gk RNA heterocomplex

HIV-1 dimerization initiation site with a CCCCCC apical loopHIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension experimental SAS data
RNAMASONRY model
Sample: HIV-1 dimerization initiation site with a CCCCCC apical loop monomer, 9 kDa RNA
HIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension monomer, 21 kDa RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Feb 20
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering. Structure (2025)
...Hall I, O'Neill HM, Keane SC
RgGuinier 3.5 nm
Dmax 13.5 nm
VolumePorod 40 nm3

SASDUV8 – HIV-1 ²H-DIS-C:¹H-DIS-Gk RNA heterocomplex (DIS-Gk contrast matched in 65% v/v D₂O - SANS data)

HIV-1 dimerization initiation site with a CCCCCC apical loopHIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension experimental SAS data
RNAMASONRY model
Sample: HIV-1 dimerization initiation site with a CCCCCC apical loop monomer, 9 kDa RNA
HIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension monomer, 21 kDa RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SANS data collected at CG-3, High Flux Isotope Reactor on 2022 Oct 5
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering. Structure (2025)
...Hall I, O'Neill HM, Keane SC
RgGuinier 1.6 nm
Dmax 5.3 nm

SASDUW8 – HIV-1 ¹H-DIS-C:²H(42%)-DIS-Gk RNA heterocomplex (DIS-Gk contrast matched in 90% v/v D₂O - SANS data)

HIV-1 dimerization initiation site with a CCCCCC apical loopHIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension experimental SAS data
RNAMASONRY model
Sample: HIV-1 dimerization initiation site with a CCCCCC apical loop monomer, 9 kDa RNA
HIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension monomer, 21 kDa RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SANS data collected at CG-3, High Flux Isotope Reactor on 2023 Sep 15
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering. Structure (2025)
...Hall I, O'Neill HM, Keane SC
RgGuinier 1.4 nm
Dmax 4.6 nm

SASDUX8 – HIV-1 ²H(42%)-DIS-C:¹H-DIS-Gk RNA heterocomplex (DIS-C contrast matched in 90% v/v D₂O - SANS data)

HIV-1 dimerization initiation site with a CCCCCC apical loopHIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension experimental SAS data
RNAMASONRY model
Sample: HIV-1 dimerization initiation site with a CCCCCC apical loop monomer, 9 kDa RNA
HIV-1 DIS with a GGGGGG apical loop, UCU bulge, and 16 bp helical extension monomer, 21 kDa RNA
Buffer: 50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment: SANS data collected at CG-3, High Flux Isotope Reactor on 2023 Sep 15
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering. Structure (2025)
...Hall I, O'Neill HM, Keane SC
RgGuinier 2.9 nm
Dmax 9.7 nm

SASDRF9 – Precursor microRNA 31

Precursor microRNA 31 experimental SAS data
DENSS model
Sample: Precursor microRNA 31 monomer, 23 kDa Homo sapiens RNA
Buffer: 50 mM potassium phosphate, 50 mM NaCl, 1 mM MgCl2, pH: 7.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 19
Structure of pre-miR-31 reveals an active role in Dicer-TRBP complex processing. Proc Natl Acad Sci U S A 120(39):e2300527120 (2023)
...Hall I, Grote S, Rouskin S, Keane SC
RgGuinier 2.9 nm
Dmax 10.6 nm
VolumePorod 31 nm3

SASDSK9 – SAM riboswitch element A aptamer domain

SAM riboswitch element A aptamer domain (RNA) experimental SAS data
SAM riboswitch element A aptamer domain (RNA) Kratky plot
Sample: SAM riboswitch element A aptamer domain (RNA) monomer, 39 kDa Listeria monocytogenes RNA
Buffer: 50 mM potassium phosphate, 135 mM NaCl, 5 mM MgCl2, pH: 6.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jun 9
Functional Validation of SAM Riboswitch Element A from Listeria monocytogenes. Biochemistry (2024)
Hall I, Zablock K, Sobetski R, Weidmann CA, Keane SC
RgGuinier 3.2 nm
Dmax 11.7 nm
VolumePorod 76 nm3

SASDSL9 – SAM riboswitch element A aptamer domain with bound S-adenosyl-L-methionine (SAM)

SAM riboswitch element A aptamer domain (RNA)S-adenosyl-L-methionine experimental SAS data
SAM riboswitch element A aptamer domain (RNA) S-adenosyl-L-methionine Kratky plot
Sample: SAM riboswitch element A aptamer domain (RNA) monomer, 39 kDa Listeria monocytogenes RNA
S-adenosyl-L-methionine monomer, 0 kDa
Buffer: 50 mM potassium phosphate, 135 mM NaCl, 5 mM MgCl2, pH: 6.5
Experiment: SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jun 9
Functional Validation of SAM Riboswitch Element A from Listeria monocytogenes. Biochemistry (2024)
Hall I, Zablock K, Sobetski R, Weidmann CA, Keane SC
RgGuinier 2.7 nm
Dmax 10.2 nm
VolumePorod 56 nm3