Small Angle Scattering Biological Data Bank SASBDB


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6 hits found for Hall

SASDBG6 – Ribosome biogenesis protein 15 (Nop15)

Ribosome biogenesis protein 15 experimental SAS data

Sample:	Ribosome biogenesis protein 15 monomer, 17 kDa Saccharomyces cerevisiae protein
Buffer:	25 mM HEPES, 500 mM NaCl, 2 mM DTT, pH: 7.5
Experiment:	SAXS data collected at 12.3.1 (SIBYLS), Advanced Light Source (ALS) on 2013 Apr 25

Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate. Nucleic Acids Res 45(5):2829-2837 (2017)
...Hall TMT

R_g^Guinier	2.4	nm
D_max	10.3	nm
Volume^Porod	38	nm³

SASDNJ7 – Non-pre-microRNA stem loop 2 (NPSL2)

Non-pre-microRNA stem loop 2 experimental SAS data

Sample:	Non-pre-microRNA stem loop 2 monomer, 14 kDa Homo sapiens RNA
Buffer:	50 mM potassium phosphate buffer, 1 mM MgCl2, 50 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Feb 20

Solution structure of NPSL2, a regulatory element in the oncomiR-1 RNA. J Mol Biol :167688 (2022)
...Hall I, Keane SC

R_g^Guinier	2.0	nm
D_max	7.7	nm
Volume^Porod	15	nm³

SASDNM8 – Quorum sensing master protein (QseM)

DUF2285 domain-containing protein experimental SAS data

DUF2285 domain-containing protein Kratky plot

Sample:	DUF2285 domain-containing protein monomer, 11 kDa Mesorhizobium loti protein
Buffer:	100 mM NaCl, 50 mM Tris-HCl, 2% glycerol, pH: 7.5
Experiment:	SAXS data collected at SAXS/WAXS, Australian Synchrotron on 2017 Dec 1

DUF2285 is a novel helix-turn-helix domain variant that orchestrates both activation and antiactivation of conjugative element transfer in proteobacteria. Nucleic Acids Res (2023)
...Hall DA, Sullivan JT, Fagerlund RD, Eto KY, Solomon PD, Mackay JP, Bond CS, Ramsay JP, Ronson CW

R_g^Guinier	1.5	nm
D_max	5.7	nm
Volume^Porod	15	nm³

SASDRF9 – Precursor microRNA 31

Precursor microRNA 31 experimental SAS data

Sample:	Precursor microRNA 31 monomer, 23 kDa Homo sapiens RNA
Buffer:	50 mM potassium phosphate, 50 mM NaCl, 1 mM MgCl2, pH: 7.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2023 Mar 19

Structure of pre-miR-31 reveals an active role in Dicer-TRBP complex processing. Proc Natl Acad Sci U S A 120(39):e2300527120 (2023)
...Hall I, Grote S, Rouskin S, Keane SC

R_g^Guinier	2.9	nm
D_max	10.6	nm
Volume^Porod	31	nm³

SASDSK9 – SAM riboswitch element A aptamer domain

SAM riboswitch element A aptamer domain (RNA) experimental SAS data

SAM riboswitch element A aptamer domain (RNA) Kratky plot

Sample:	SAM riboswitch element A aptamer domain (RNA) monomer, 39 kDa Listeria monocytogenes RNA
Buffer:	50 mM potassium phosphate, 135 mM NaCl, 5 mM MgCl2, pH: 6.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jun 9

Functional Validation of SAM Riboswitch Element A from Listeria monocytogenes. Biochemistry (2024)
Hall I, Zablock K, Sobetski R, Weidmann CA, Keane SC

R_g^Guinier	3.2	nm
D_max	11.7	nm
Volume^Porod	76	nm³

SASDSL9 – SAM riboswitch element A aptamer domain with bound S-adenosyl-L-methionine (SAM)

SAM riboswitch element A aptamer domain (RNA)S-adenosyl-L-methionine experimental SAS data

SAM riboswitch element A aptamer domain (RNA) S-adenosyl-L-methionine Kratky plot

Sample:	SAM riboswitch element A aptamer domain (RNA) monomer, 39 kDa Listeria monocytogenes RNA S-adenosyl-L-methionine monomer, 0 kDa
Buffer:	50 mM potassium phosphate, 135 mM NaCl, 5 mM MgCl2, pH: 6.5
Experiment:	SAXS data collected at BioCAT 18ID, Advanced Photon Source (APS), Argonne National Laboratory on 2022 Jun 9