Small Angle Scattering Biological Data Bank SASBDB

Browse by MODEL: Ab initio only

SASDBX3 – Aureobox dsDNA

Sample:	Aureobox dsDNA monomer, 13 kDa synthetic construct DNA
Buffer:	50 mM Tris 50 mM boric acid 1 mM EDTA, pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2014 Nov 6

Allosteric communication between DNA-binding and light-responsive domains of diatom class I aureochromes. Nucleic Acids Res 44(12):5957-70 (2016)
Banerjee A, Herman E, Serif M, Maestre-Reyna M, Hepp S, Pokorny R, Kroth PG, Essen LO, Kottke T

R_g^Guinier	2.0	nm
D_max	8.6	nm
Volume^Porod	18	nm³

SASDBY3 – Aureochrome 1a bZIP-LOV module: PtAUREO1a bZIP-LOV (Light oxygen voltage) module (light state-TBE)

Aureochrome 1a bZIP-LOV module experimental SAS data

Sample:	Aureochrome 1a bZIP-LOV module dimer, 57 kDa Phaeodactylum tricornutum protein
Buffer:	50 mM Tris 50 mM boric acid 1 mM EDTA, pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2014 Nov 6

R_g^Guinier	3.4	nm
D_max	12.6	nm
Volume^Porod	115	nm³

SASDBZ3 – Aureochrome 1a bZIP-LOV module: PtAUREO1a bZIP-LOV (Light oxygen voltage)/DNA complex (light state)

Aureobox dsDNAAureochrome 1a bZIP-LOV module experimental SAS data

Sample:	Aureobox dsDNA monomer, 13 kDa synthetic construct DNA Aureochrome 1a bZIP-LOV module dimer, 57 kDa Phaeodactylum tricornutum protein
Buffer:	50 mM Tris 50 mM boric acid 1 mM EDTA, pH: 8
Experiment:	SAXS data collected at BM29, ESRF on 2014 Nov 6

R_g^Guinier	4.5	nm
D_max	16.7	nm
Volume^Porod	97	nm³

SASDBK4 – The 1:1:3:1 crRNA:Cas6f:Cas7fv:Cas5fv CRISPR/Cas Type I-F short Cascade complex

short-crRNA: CRISPR/Cas Type I-F Cascade componentCas6f: CRISPR/Cas Type I-F Cascade component (CRISPR-associated protein, Csy4 family)Trimeric Cas7fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1821)Cas5fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1822) experimental SAS data

Sample:	Short-crRNA: CRISPR/Cas Type I-F Cascade component monomer, 14 kDa Shewanella putrefaciens RNA Cas6f: CRISPR/Cas Type I-F Cascade component (CRISPR-associated protein, Csy4 family) monomer, 21 kDa Shewanella putrefaciens protein Trimeric Cas7fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1821) trimer, 112 kDa Shewanella putrefaciens protein Cas5fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1822) monomer, 38 kDa Shewanella putrefaciens protein
Buffer:	50 mM HEPES 150 mM NaCl 1mM DTT 1mM EDTA, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2015 Jun 27

Modulating the Cascade architecture of a minimal Type I-F CRISPR-Cas system. Nucleic Acids Res 44(12):5872-82 (2016)
Gleditzsch D, Müller-Esparza H, Pausch P, Sharma K, Dwarakanath S, Urlaub H, Bange G, Randau L

R_g^Guinier	4.1	nm
D_max	14.2	nm

SASDBL4 – The 1:1:6:1 crRNA:Cas6f:Cas7fv:Cas5fv CRISPR/Cas Type I-F wild-type Cascade complex

Cas6f: CRISPR/Cas Type I-F Cascade component (CRISPR-associated protein, Csy4 family)Cas5fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1822)Hexameric Cas7fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1821)wildtype-crRNA: CRISPR/Cas Type I-F Cascade component experimental SAS data

Sample:	Cas6f: CRISPR/Cas Type I-F Cascade component (CRISPR-associated protein, Csy4 family) monomer, 21 kDa Shewanella putrefaciens protein Cas5fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1822) monomer, 38 kDa Shewanella putrefaciens protein Hexameric Cas7fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1821) hexamer, 223 kDa Shewanella putrefaciens protein Wildtype-crRNA: CRISPR/Cas Type I-F Cascade component monomer, 19 kDa RNA
Buffer:	50 mM HEPES 150 mM NaCl 1mM DTT 1mM EDTA, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2015 Jun 27

R_g^Guinier	5.4	nm
D_max	18.4	nm

SASDBM4 – The 1:1:9:1 crRNA:Cas6f:Cas7fv:Cas5fv CRISPR/Cas Type I-F long Cascade complex

Sample:	Cas6f: CRISPR/Cas Type I-F Cascade component (CRISPR-associated protein, Csy4 family) monomer, 21 kDa Shewanella putrefaciens protein Cas5fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1822) monomer, 38 kDa Shewanella putrefaciens protein Nonameric Cas7fv: CRISPR/Cas Type I-F Cascade component (Uncharacterized protein, Sputcn32_1821) nonamer, 335 kDa Shewanella putrefaciens protein Long-crRNA: CRISPR/Cas Type I-F Cascade component monomer, 25 kDa RNA
Buffer:	50 mM HEPES 150 mM NaCl 1mM DTT 1mM EDTA, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2016 Jan 30

R_g^Guinier	6.5	nm
D_max	21.6	nm

SASDB54 – Leishmania braziliensis stress-induced protein sti1 (LbHop), full length construct

Stress-induced protein sti1 experimental SAS data

Sample:	Stress-induced protein sti1 monomer, 62 kDa Leishmania braziliensis protein
Buffer:	25 mM Tris 100 mM NaCl 1 mM EDTA 1 mM β-mercaptoethanol, pH: 7.5
Experiment:	SAXS data collected at SAXS1 Beamline, Brazilian Synchrotron Light Laboratory on 2016 Feb 21

Low sequence identity but high structural and functional conservation: The case of Hsp70/Hsp90 organizing protein (Hop/Sti1) of Leishmania braziliensis. Arch Biochem Biophys 600:12-22 (2016)
Batista FAH, Seraphim TV, Santos CA, Gonzaga MR, Barbosa LRS, Ramos CHI, Borges JC

R_g^Guinier	4.5	nm
D_max	18.0	nm
Volume^Porod	94	nm³

SASDB64 – Leishmania braziliensis stress-induced protein sti1 (LbHop TPR2A-TPR2B-DP2 construct)

Stress-induced protein sti1 (Hop TPR2A-TPR2B-DP2 construct) experimental SAS data

Sample:	Stress-induced protein sti1 (Hop TPR2A-TPR2B-DP2 construct) monomer, 44 kDa Leishmania braziliensis protein
Buffer:	25 mM Tris 100 mM NaCl 1 mM EDTA 1 mM β-mercaptoethanol, pH: 7.5
Experiment:	SAXS data collected at SAXS2 Beamline, Brazilian Synchrotron Light Laboratory on 2016 Feb 21

R_g^Guinier	3.8	nm
D_max	14.0	nm
Volume^Porod	65	nm³

SASDBU4 – Vaccinia primase D5 protein fragment containing the D5N and helicase domain

Primase D5 protein fragment containing the D5N and helicase domain experimental SAS data

Sample:	Primase D5 protein fragment containing the D5N and helicase domain hexamer, 321 kDa Vaccinia virus protein
Buffer:	20 mM Tris 150 mM NaCL 5% glycerol 1mM DTT, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2014 Sep 26

Domain Organization of Vaccinia Virus Helicase-Primase D5. J Virol 90(9):4604-4613 (2016)
Hutin S, Ling WL, Round A, Effantin G, Reich S, Iseni F, Tarbouriech N, Schoehn G, Burmeister WP

R_g^Guinier	4.8	nm
D_max	14.5	nm
Volume^Porod	570	nm³

SASDB74 – CyaA Block I-V

Adenylate cyclase toxin Block I-V experimental SAS data

Sample:	Adenylate cyclase toxin Block I-V monomer, 70 kDa Bordetella pertussis protein
Buffer:	10 mM Tris HCl 150 mM NaCl 10 mM CaCl2, pH: 8
Experiment:	SAXS data collected at EMBL P12, PETRA III on 2013 Oct 31

Calcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts. Mol Cell 62(1):47-62 (2016)
Bumba L, Masin J, Macek P, Wald T, Motlova L, Bibova I, Klimova N, Bednarova L, Veverka V, Kachala M, Svergun DI, Barinka C, Sebo P

R_g^Guinier	5.6	nm
D_max	17.2	nm
Volume^Porod	275	nm³

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