Sign in
|
Register
Home
Browse
Submit data
About SASBDB
Help
Search
Advanced search
152
hits found for
Konarev
SASDG52
– 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) vesicles: 30 nm filter extrusion
Sample:
1,2-dimyristoyl-sn-glycero-3-phosphocholine monomer, 1 kDa
Buffer:
water, pH: 7
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Jul 9
Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data
Journal of Applied Crystallography
54(1) (2021)
Konarev
P, Gruzinov A, Mertens H, Svergun D
D
max
66.0
nm
SASDG62
– 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) vesicles: 50 nm filter extrusion
Sample:
1,2-dimyristoyl-sn-glycero-3-phosphocholine monomer, 1 kDa
Buffer:
water, pH: 7
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Jul 9
Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data
Journal of Applied Crystallography
54(1) (2021)
Konarev
P, Gruzinov A, Mertens H, Svergun D
D
max
81.5
nm
SASDG72
– 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) vesicles: 100 nm filter extrusion
Sample:
1,2-dimyristoyl-sn-glycero-3-phosphocholine monomer, 1 kDa
Buffer:
water, pH: 7
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Jul 9
Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data
Journal of Applied Crystallography
54(1) (2021)
Konarev
P, Gruzinov A, Mertens H, Svergun D
D
max
111.0
nm
SASDG82
– 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) vesicles: 200 nm filter extrusion
Sample:
1,2-dimyristoyl-sn-glycero-3-phosphocholine monomer, 1 kDa
Buffer:
water, pH: 7
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Jul 9
Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data
Journal of Applied Crystallography
54(1) (2021)
Konarev
P, Gruzinov A, Mertens H, Svergun D
D
max
147.0
nm
SASDG92
– 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) vesicles: 30 nm filter extrusion
Sample:
1,2-dipalmitoyl-sn-glycero-3-phosphocholine monomer, 1 kDa
Buffer:
water, pH: 7
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Jul 9
Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data
Journal of Applied Crystallography
54(1) (2021)
Konarev
P, Gruzinov A, Mertens H, Svergun D
D
max
66.0
nm
SASDGA2
– 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) vesicles: 50 nm filter extrusion
Sample:
1,2-dipalmitoyl-sn-glycero-3-phosphocholine monomer, 1 kDa
Buffer:
water, pH: 7
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Jul 9
Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data
Journal of Applied Crystallography
54(1) (2021)
Konarev
P, Gruzinov A, Mertens H, Svergun D
D
max
105.0
nm
SASDGB2
– 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) vesicles: 100 nm filter extrusion
Sample:
1,2-dipalmitoyl-sn-glycero-3-phosphocholine monomer, 1 kDa
Buffer:
water, pH: 7
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Jul 9
Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data
Journal of Applied Crystallography
54(1) (2021)
Konarev
P, Gruzinov A, Mertens H, Svergun D
D
max
112.0
nm
SASDGC2
– 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) vesicles: 200 nm filter extrusion
Sample:
1,2-dipalmitoyl-sn-glycero-3-phosphocholine monomer, 1 kDa
Buffer:
water, pH: 7
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Jul 9
Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data
Journal of Applied Crystallography
54(1) (2021)
Konarev
P, Gruzinov A, Mertens H, Svergun D
D
max
180.0
nm
SASDMR2
– HPMA-Based Nanoparticles with Cholesterol (1.4%)
Sample:
N-(2-hydroxypropyl)- 31 methacrylamide (HPMA) copolymers with cholesterol 1.4% 0, 16272 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2011 Mar 27
Macromolecular HPMA-based nanoparticles with cholesterol for solid-tumor targeting: detailed study of the inner structure of a highly efficient drug delivery system.
Biomacromolecules
13(8):2594-604 (2012)
...
Konarev
PV, Dyakonova M, Papadakis C, Zhigunov A, Plestil J, Stepanek P, Etrych T, Ulbrich K, Svergun DI
R
g
Guinier
6.2
nm
D
max
22.0
nm
SASDMS2
– HPMA-Based Nanoparticles with Cholesterol (2.7%)
Sample:
N-(2-hydroxypropyl)- 31 methacrylamide (HPMA) copolymers with Cholesterol (2.7%) 0, 16740 kDa
Buffer:
phosphate buffer saline (PBS) (pH 7.2), pH: 7.2
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2011 Mar 27
Macromolecular HPMA-based nanoparticles with cholesterol for solid-tumor targeting: detailed study of the inner structure of a highly efficient drug delivery system.
Biomacromolecules
13(8):2594-604 (2012)
...
Konarev
PV, Dyakonova M, Papadakis C, Zhigunov A, Plestil J, Stepanek P, Etrych T, Ulbrich K, Svergun DI
R
g
Guinier
5.2
nm
D
max
28.1
nm
SASDMT2
– HPMA-Based Nanoparticles with Cholesterol (3.0%)
Sample:
N-(2-hydroxypropyl)- 31 methacrylamide (HPMA) copolymers with Cholesterol (3.0%) 0, 29520 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2011 Mar 27
Macromolecular HPMA-based nanoparticles with cholesterol for solid-tumor targeting: detailed study of the inner structure of a highly efficient drug delivery system.
Biomacromolecules
13(8):2594-604 (2012)
...
Konarev
PV, Dyakonova M, Papadakis C, Zhigunov A, Plestil J, Stepanek P, Etrych T, Ulbrich K, Svergun DI
R
g
Guinier
9.4
nm
D
max
43.2
nm
SASDMU2
– Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - 5α-cholestan-3-one) without Dox
Sample:
Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - 5α-cholestan-3-one) without Dox monomer, 125 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2012 Aug 19
Hydrolytically degradable polymer micelles for drug delivery: a SAXS/SANS kinetic study.
Biomacromolecules
14(11):4061-70 (2013)
...
Konarev
PV, Chytil P, Etrych T, Bogomolova A, Dyakonova M, Papadakis CM, Radulescu A, Ulbrich K, Stepanek P, Svergun DI
R
g
Guinier
6.1
nm
D
max
20.5
nm
SASDMV2
– Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - 5α-cholestan-3-one) with Dox
Sample:
Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - 5α-cholestan-3-one) with Dox (10%) monomer, 220 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2012 Aug 19
Hydrolytically degradable polymer micelles for drug delivery: a SAXS/SANS kinetic study.
Biomacromolecules
14(11):4061-70 (2013)
...
Konarev
PV, Chytil P, Etrych T, Bogomolova A, Dyakonova M, Papadakis CM, Radulescu A, Ulbrich K, Stepanek P, Svergun DI
R
g
Guinier
7.5
nm
D
max
25.5
nm
SASDMW2
– Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - Opb-Chol) without Dox
Sample:
Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - Opb-Chol) without Dox monomer, 125 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2012 Aug 19
Hydrolytically degradable polymer micelles for drug delivery: a SAXS/SANS kinetic study.
Biomacromolecules
14(11):4061-70 (2013)
...
Konarev
PV, Chytil P, Etrych T, Bogomolova A, Dyakonova M, Papadakis CM, Radulescu A, Ulbrich K, Stepanek P, Svergun DI
R
g
Guinier
6.4
nm
D
max
22.5
nm
SASDMX2
– Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - Opb-Chol) with Dox (10%)
Sample:
Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - Opb-Chol) with Dox (10%) monomer, 225 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2012 Aug 19
Hydrolytically degradable polymer micelles for drug delivery: a SAXS/SANS kinetic study.
Biomacromolecules
14(11):4061-70 (2013)
...
Konarev
PV, Chytil P, Etrych T, Bogomolova A, Dyakonova M, Papadakis CM, Radulescu A, Ulbrich K, Stepanek P, Svergun DI
R
g
Guinier
10.0
nm
D
max
21.9
nm
SASDBY2
– Inorganic pyrophosphatase (PPase) from E. coli
Sample:
Inorganic pyrophosphatase (PPase) from E. coli hexamer, 117 kDa
Escherichia coli
protein
Buffer:
50 mM Tris 10 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 30
X-Ray Solution Scattering Study of Four Escherichia coli Enzymes Involved in Stationary-Phase Metabolism.
PLoS One
11(5):e0156105 (2016)
...
Konarev
PV, Rodina EV, Snalina NE, Vorobyeva NN, Kurilova SA, Nazarova TI, Jeffries CM, Svergun DI
R
g
Guinier
3.0
nm
D
max
9.0
nm
Volume
Porod
166
nm
3
SASDMY2
– Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - Lev-Chol) without Dox
Sample:
Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - Lev-Chol) without Dox monomer, 125 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2012 Aug 19
Hydrolytically degradable polymer micelles for drug delivery: a SAXS/SANS kinetic study.
Biomacromolecules
14(11):4061-70 (2013)
...
Konarev
PV, Chytil P, Etrych T, Bogomolova A, Dyakonova M, Papadakis CM, Radulescu A, Ulbrich K, Stepanek P, Svergun DI
R
g
Guinier
6.5
nm
D
max
22.9
nm
SASDBZ2
– Class I fructose-1,6-bisphosphate aldolase (FbaB) from E. coli
Sample:
Class I fructose-1,6-bisphosphate aldolase (FbaB) from E. coli decamer, 381 kDa
Escherichia coli
protein
Buffer:
50 mM Tris 10 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 30
X-Ray Solution Scattering Study of Four Escherichia coli Enzymes Involved in Stationary-Phase Metabolism.
PLoS One
11(5):e0156105 (2016)
...
Konarev
PV, Rodina EV, Snalina NE, Vorobyeva NN, Kurilova SA, Nazarova TI, Jeffries CM, Svergun DI
R
g
Guinier
4.4
nm
D
max
12.7
nm
Volume
Porod
484
nm
3
SASDMZ2
– Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - Lev-Chol) with Dox (10%)
Sample:
Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - Lev-Chol) with Dox (10%) monomer, 125 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2012 Aug 19
Hydrolytically degradable polymer micelles for drug delivery: a SAXS/SANS kinetic study.
Biomacromolecules
14(11):4061-70 (2013)
...
Konarev
PV, Chytil P, Etrych T, Bogomolova A, Dyakonova M, Papadakis CM, Radulescu A, Ulbrich K, Stepanek P, Svergun DI
R
g
Guinier
6.9
nm
D
max
23.8
nm
SASDB23
– 5-keto-4-deoxyuronate isomerase (KduI) from E. coli
Sample:
5-keto-4-deoxyuronate isomerase (KduI) from E. coli None,
Escherichia coli
protein
Buffer:
50 mM Tris 10 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 20
X-Ray Solution Scattering Study of Four Escherichia coli Enzymes Involved in Stationary-Phase Metabolism.
PLoS One
11(5):e0156105 (2016)
...
Konarev
PV, Rodina EV, Snalina NE, Vorobyeva NN, Kurilova SA, Nazarova TI, Jeffries CM, Svergun DI
R
g
Guinier
4.5
nm
SASDM23
– Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - cholest-4-en-3-one) without Dox
Sample:
Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - cholest-4-en-3-one) without Dox monomer, 125 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2012 Aug 16
Hydrolytically degradable polymer micelles for drug delivery: a SAXS/SANS kinetic study.
Biomacromolecules
14(11):4061-70 (2013)
...
Konarev
PV, Chytil P, Etrych T, Bogomolova A, Dyakonova M, Papadakis CM, Radulescu A, Ulbrich K, Stepanek P, Svergun DI
R
g
Guinier
5.9
nm
D
max
19.7
nm
SASDB33
– Glutamate decarboxylase alpha (GadA) from E. coli
Sample:
Glutamate decarboxylase alpha (GadA) from E. coli monomer, 53 kDa
Escherichia coli
protein
Buffer:
50 mM Tris 10 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Jun 20
X-Ray Solution Scattering Study of Four Escherichia coli Enzymes Involved in Stationary-Phase Metabolism.
PLoS One
11(5):e0156105 (2016)
...
Konarev
PV, Rodina EV, Snalina NE, Vorobyeva NN, Kurilova SA, Nazarova TI, Jeffries CM, Svergun DI
R
g
Guinier
4.8
nm
Volume
Porod
410
nm
3
SASDM33
– Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - cholest-4-en-3-one) with Dox (10%)
Sample:
Hydrolytically Degradable Polymer Micelles for Drug Delivery (structure of hydrophobic substituent - cholest-4-en-3-one) with Dox (10%) monomer, 125 kDa
Buffer:
phosphate buffer saline (PBS) (pH 5.0), pH: 5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2012 Aug 19
Hydrolytically degradable polymer micelles for drug delivery: a SAXS/SANS kinetic study.
Biomacromolecules
14(11):4061-70 (2013)
...
Konarev
PV, Chytil P, Etrych T, Bogomolova A, Dyakonova M, Papadakis CM, Radulescu A, Ulbrich K, Stepanek P, Svergun DI
R
g
Guinier
5.5
nm
D
max
18.3
nm
SASDN33
– Ternary Human Pex5p(C-terminal)-Pex14p(N)-PTS1 Complex (1:1:1 stoichiometry)
Sample:
Peroxisomal targeting signal 1 receptor (C -terminal) monomer, 48 kDa
Homo sapiens
protein
Peroxisomal membrane protein PEX14 (N-terminal) monomer, 7 kDa
Homo sapiens
protein
PTS1-BP monomer, 14 kDa
Homo sapiens
protein
Buffer:
50 mM HEPES-KOH (pH 7.5), 100mM KCl, and 20mM TCEP, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2005 Oct 3
Solution structure of human Pex5.Pex14.PTS1 protein complexes obtained by small angle X-ray scattering.
J Biol Chem
284(37):25334-42 (2009)
...
Konarev
PV, Neufeld C, Wilmanns M, Svergun DI
R
g
Guinier
2.9
nm
D
max
9.0
nm
Volume
Porod
110
nm
3
SASDN43
– Full-length Human Pex5p protein
Sample:
Peroxisomal targeting signal 1 receptor monomer, 71 kDa
Homo sapiens
protein
Buffer:
50 mM HEPES-KOH (pH 7.5), 100mM KCl, and 20mM TCEP, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2006 Feb 24
Solution structure of human Pex5.Pex14.PTS1 protein complexes obtained by small angle X-ray scattering.
J Biol Chem
284(37):25334-42 (2009)
...
Konarev
PV, Neufeld C, Wilmanns M, Svergun DI
R
g
Guinier
5.0
nm
D
max
20.0
nm
Volume
Porod
181
nm
3
SASDN53
– Ternary Human Pex5p(full-length)-Pex14p(N)-PTS1 Protein Complex (1:7:1 stoichiometry)
Sample:
Peroxisomal targeting signal 1 receptor monomer, 71 kDa
Homo sapiens
protein
Peroxisomal membrane protein PEX14 monomer, 7 kDa
Homo sapiens
protein
PTS1-BP monomer, 13 kDa
Homo sapiens
protein
Buffer:
50 mM HEPES-KOH (pH 7.5), 100mM KCl, and 20mM TCEP, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2006 Mar 18
Solution structure of human Pex5.Pex14.PTS1 protein complexes obtained by small angle X-ray scattering.
J Biol Chem
284(37):25334-42 (2009)
...
Konarev
PV, Neufeld C, Wilmanns M, Svergun DI
R
g
Guinier
6.0
nm
D
max
20.0
nm
Volume
Porod
267
nm
3
SASDM73
– Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 0%)
Sample:
Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 0%) heptamer, 2 kDa
Buffer:
water-ethanol solution (water fraction 0%), pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Nov 24
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution.
J Chem Phys
130(24):245103 (2009)
...
Konarev
PV, Tribet C, Baron A, Svergun DI, Guyot S
R
g
Guinier
1.0
nm
D
max
3.5
nm
SASDM83
– Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 60%)
Sample:
Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 60%) heptamer, 2 kDa
Buffer:
water-ethanol solution (water fraction 60%), pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Nov 24
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution.
J Chem Phys
130(24):245103 (2009)
...
Konarev
PV, Tribet C, Baron A, Svergun DI, Guyot S
R
g
Guinier
1.0
nm
D
max
3.2
nm
SASDM93
– Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 100%)
Sample:
Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 100%) heptamer, 2 kDa
Buffer:
water-ethanol solution (water fraction 100%), pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Nov 24
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution.
J Chem Phys
130(24):245103 (2009)
...
Konarev
PV, Tribet C, Baron A, Svergun DI, Guyot S
R
g
Guinier
1.0
nm
D
max
3.1
nm
SASDN93
– Dystrophiamyotonica kinase (DMPK)
Sample:
Myotonin-protein kinase monomer, 92 kDa
Homo sapiens
protein
Buffer:
50 mM TrisHCl 50mM NaCl, 2.5 mM-mercaptoethanol, pH: 8
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2005 Mar 18
Molecular insights into the self‐assembly mechanism of dystrophia myotonica kinase
The FASEB Journal
20(8):1142-1151 (2006)
...
Konarev
P, Marino M, Mayans O
R
g
Guinier
3.9
nm
D
max
13.0
nm
Volume
Porod
173
nm
3
SASDMA3
– Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 100%)
Sample:
Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 100%) heptamer, 2 kDa
Buffer:
water-ethanol solution (water fraction 100%), pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Oct 12
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution.
J Chem Phys
130(24):245103 (2009)
...
Konarev
PV, Tribet C, Baron A, Svergun DI, Guyot S
R
g
Guinier
1.0
nm
D
max
3.3
nm
SASDMB3
– Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 80%)
Sample:
Native tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 80%) heptamer, 2 kDa
Buffer:
water-ethanol solution (water fraction 80%), pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Nov 24
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution.
J Chem Phys
130(24):245103 (2009)
...
Konarev
PV, Tribet C, Baron A, Svergun DI, Guyot S
R
g
Guinier
0.9
nm
D
max
3.3
nm
SASDMC3
– Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 0%)
Sample:
Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 0%) heptamer, 2 kDa
Buffer:
water-ethanol solution (water fraction 0%), pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Nov 24
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution.
J Chem Phys
130(24):245103 (2009)
...
Konarev
PV, Tribet C, Baron A, Svergun DI, Guyot S
R
g
Guinier
1.3
nm
D
max
4.5
nm
SASDMD3
– Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 20%)
Sample:
Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 20%) heptamer, 2 kDa
Buffer:
water-ethanol solution (water fraction 20%), pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Nov 24
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution.
J Chem Phys
130(24):245103 (2009)
...
Konarev
PV, Tribet C, Baron A, Svergun DI, Guyot S
R
g
Guinier
1.1
nm
D
max
3.5
nm
SASDME3
– Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 60%)
Sample:
Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 60%) heptamer, 2 kDa
Buffer:
water-ethanol solution (water fraction 60%), pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Nov 24
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution.
J Chem Phys
130(24):245103 (2009)
...
Konarev
PV, Tribet C, Baron A, Svergun DI, Guyot S
R
g
Guinier
1.0
nm
D
max
2.9
nm
SASDMF3
– Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 80%)
Sample:
Oxidized tannin macromolecules (DP7, average polymerization 6.3) in water-ethanol solution (water fraction 80%) heptamer, 2 kDa
Buffer:
water-ethanol solution (water fraction 80%), pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Oct 12
Rigidity, conformation, and solvation of native and oxidized tannin macromolecules in water-ethanol solution.
J Chem Phys
130(24):245103 (2009)
...
Konarev
PV, Tribet C, Baron A, Svergun DI, Guyot S
R
g
Guinier
1.2
nm
D
max
3.6
nm
SASDAS3
– Fila16-17
Sample:
immunoglobulin- like filamin two-domain fragment 16-17 monomer, 19 kDa
Escherichia coli
protein
Buffer:
100 mM NaCl 10 mM dithiothreitol 20 mM Tris, pH: 8
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Jun 18
Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin.
J Biol Chem
284(37):25450-8 (2009)
...
Konarev
PV, Svergun DI, Iivanainen T, Heikkinen SM, Permi P, Koskela H, Kilpeläinen I, Ylänne J
R
g
Guinier
1.9
nm
D
max
6.0
nm
Volume
Porod
33
nm
3
SASDAT3
– Fila18-19
Sample:
immunoglobulin- like filamin two-domain fragment 18-19 monomer, 20 kDa
Escherichia coli
protein
Buffer:
100 mM NaCl 10 mM dithiothreitol 20 mM Tris, pH: 8
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Jun 18
Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin.
J Biol Chem
284(37):25450-8 (2009)
...
Konarev
PV, Svergun DI, Iivanainen T, Heikkinen SM, Permi P, Koskela H, Kilpeläinen I, Ylänne J
R
g
Guinier
2.1
nm
D
max
6.5
nm
Volume
Porod
34
nm
3
SASDAU3
– Fila22-23
Sample:
immunoglobulin- like filamin two-domain fragment 22-23 monomer, 19 kDa
Escherichia coli
protein
Buffer:
100 mM NaCl 10 mM dithiothreitol 20 mM Tris, pH: 8
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Jun 18
Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin.
J Biol Chem
284(37):25450-8 (2009)
...
Konarev
PV, Svergun DI, Iivanainen T, Heikkinen SM, Permi P, Koskela H, Kilpeläinen I, Ylänne J
R
g
Guinier
2.8
nm
D
max
9.0
nm
Volume
Porod
32
nm
3
SASDA54
– RNA Aptamer
Sample:
SRB2m dimer, 33 kDa RNA
Buffer:
Hepes, pH: 7.4
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Oct 24
Characterization of a fluorophore binding RNA aptamer by fluorescence correlation spectroscopy and small angle X-ray scattering.
Anal Biochem
389(1):52-62 (2009)
...
Konarev
PV, Svergun DI, Hahn U
R
g
Guinier
2.8
nm
D
max
10.0
nm
Volume
Porod
38
nm
3
SASDA74
– RNA Aptamer
Sample:
SRB2m dimer, 33 kDa RNA
Buffer:
Hepes, pH: 7.4
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Oct 24
Characterization of a fluorophore binding RNA aptamer by fluorescence correlation spectroscopy and small angle X-ray scattering.
Anal Biochem
389(1):52-62 (2009)
...
Konarev
PV, Svergun DI, Hahn U
R
g
Guinier
2.4
nm
D
max
8.5
nm
Volume
Porod
31
nm
3
SASDA84
– RNA Aptamer
Sample:
SRB2m dimer, 33 kDa RNA
Buffer:
Hepes, pH: 7.4
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Oct 24
Characterization of a fluorophore binding RNA aptamer by fluorescence correlation spectroscopy and small angle X-ray scattering.
Anal Biochem
389(1):52-62 (2009)
...
Konarev
PV, Svergun DI, Hahn U
R
g
Guinier
2.3
nm
D
max
8.0
nm
Volume
Porod
24
nm
3
SASDA94
– Der p21
Sample:
Der p21, allegren dimer, 26 kDa
Escherichia coli
protein
Buffer:
10 mM Hepes , pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2006 Jul 24
Characterization of Der p 21, a new important allergen derived from the gut of house dust mites.
Allergy
63(6):758-67 (2008)
...
Konarev
PV, Valent P, Thalhamer J, Keller W, Valenta R, Vrtala S
R
g
Guinier
2.7
nm
D
max
8.5
nm
Volume
Porod
50
nm
3
SASDAA4
– Full length GbpA
Sample:
Full length GbpA monomer, 54 kDa
Vibrio cholerae
protein
Buffer:
25 mM Tris/HCl 150 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Oct 16
The Vibrio cholerae colonization factor GbpA possesses a modular structure that governs binding to different host surfaces.
PLoS Pathog
8(1):e1002373 (2012)
...
Konarev
PV, Ibrahim AF, Svergun DI, Eijsink VG, Chatterjee NS, van Aalten DM
R
g
Guinier
3.9
nm
D
max
14.5
nm
Volume
Porod
100
nm
3
SASDAB4
– Truncated GbpA
Sample:
Truncated GbpA monomer, 44 kDa
Vibrio cholerae
protein
Buffer:
25 mM Tris/HCl 150 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Oct 16
The Vibrio cholerae colonization factor GbpA possesses a modular structure that governs binding to different host surfaces.
PLoS Pathog
8(1):e1002373 (2012)
...
Konarev
PV, Ibrahim AF, Svergun DI, Eijsink VG, Chatterjee NS, van Aalten DM
R
g
Guinier
3.6
nm
D
max
12.5
nm
Volume
Porod
80
nm
3
SASDAC4
– FilaminC 23-24
Sample:
Filamin C 23-24 dimer, 40 kDa
Escherichia coli
protein
Buffer:
20 mM Tris-HCl 50 mM NaCl, pH: 8
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2005 Jun 17
Crystal structure of human filamin C domain 23 and small angle scattering model for filamin C 23-24 dimer.
J Mol Biol
368(4):1011-23 (2007)
...
Konarev
P, Carugo O, Rybin V, Kiema TR, Svergun D, Ylänne J, Djinović Carugo K
R
g
Guinier
3.5
nm
D
max
13.0
nm
Volume
Porod
75
nm
3
SASDAD4
– Full length GtBP3
Sample:
full length CtBP3 tetramer, 170 kDa protein
Buffer:
25 mM Tris/HCl 250 mM NaCl, pH: 8
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2004 Nov 18
The C-terminal domain of the transcriptional corepressor CtBP is intrinsically unstructured.
Protein Sci
15(5):1042-50 (2006)
...
Konarev
PV, Spanò S, Fasano M, Bracco C, Pesce A, Donadini A, Cericola C, Secundo F, Luini A, Corda D, Bolognesi M
R
g
Guinier
5.1
nm
D
max
19.0
nm
Volume
Porod
330
nm
3
SASDAE4
– C-terminal CtBP3
Sample:
C-term part CtBP3 dimer, 52 kDa protein
Buffer:
25 mM Tris/HCl 250 mM NaCl, pH: 8
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2004 Nov 18
The C-terminal domain of the transcriptional corepressor CtBP is intrinsically unstructured.
Protein Sci
15(5):1042-50 (2006)
...
Konarev
PV, Spanò S, Fasano M, Bracco C, Pesce A, Donadini A, Cericola C, Secundo F, Luini A, Corda D, Bolognesi M
R
g
Guinier
5.5
nm
D
max
20.0
nm
Volume
Porod
126
nm
3
SASDBS4
– Glutamate decarboxylase alpha (GadA) from E. coli, low salt
Sample:
Glutamate decarboxylase alpha (GadA) from E. coli monomer, 53 kDa
Escherichia coli
protein
Buffer:
50 mM Tris, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2015 Jul 29
X-Ray Solution Scattering Study of Four Escherichia coli Enzymes Involved in Stationary-Phase Metabolism.
PLoS One
11(5):e0156105 (2016)
...
Konarev
PV, Rodina EV, Snalina NE, Vorobyeva NN, Kurilova SA, Nazarova TI, Jeffries CM, Svergun DI
R
g
Guinier
4.4
nm
Volume
Porod
450
nm
3
SASDA55
– Nucleoplasmin
Sample:
Nucleoplasmin pentamer, 110 kDa
Escherichia coli
protein
Buffer:
20 mM Pipes buffer 150 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Dec 3
A mechanism for histone chaperoning activity of nucleoplasmin: thermodynamic and structural models.
J Mol Biol
393(2):448-63 (2009)
...
Konarev
PV, Svergun DI, Velázquez-Campoy A, Urbaneja MA
R
g
Guinier
4.0
nm
D
max
12.6
nm
Volume
Porod
210
nm
3
SASDA65
– Nucleoplasmin-H5 complex
Sample:
NP-H5 pentamer, 200 kDa
Escherichia coli
protein
Buffer:
20 mM Pipes buffer 150 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Dec 3
A mechanism for histone chaperoning activity of nucleoplasmin: thermodynamic and structural models.
J Mol Biol
393(2):448-63 (2009)
...
Konarev
PV, Svergun DI, Velázquez-Campoy A, Urbaneja MA
R
g
Guinier
5.2
nm
D
max
16.7
nm
Volume
Porod
410
nm
3
SASDA75
– Nucleoplasmin-H2AH2B complex
Sample:
NP-H2AH2B pentamer, 250 kDa
Escherichia coli
protein
Buffer:
20 mM Pipes buffer 150 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2014 Dec 3
A mechanism for histone chaperoning activity of nucleoplasmin: thermodynamic and structural models.
J Mol Biol
393(2):448-63 (2009)
...
Konarev
PV, Svergun DI, Velázquez-Campoy A, Urbaneja MA
R
g
Guinier
4.7
nm
D
max
14.5
nm
Volume
Porod
470
nm
3
SASDC95
– Light encoded DNA biosensor: e14A DNA
Sample:
e14A monomer, 21 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
2.8
nm
D
max
12.5
nm
SASDCA5
– Light encoded DNA biosensor: e14B DNA
Sample:
e14B monomer, 13 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
1.9
nm
D
max
9.0
nm
SASDCB5
– Light encoded DNA biosensor: e14C DNA
Sample:
e14C monomer, 5 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
1.3
nm
D
max
5.0
nm
SASDAC5
– ImportinA_ImportinB
Sample:
ImportinA_ImportinB monomer, 160 kDa
Escherichia coli
protein
Buffer:
50 mM Tris-HCL 150 mM NaCl 1.0 mM DTT, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2009 Oct 29
Recognition of nucleoplasmin by its nuclear transport receptor importin α/β: insights into a complete import complex.
Biochemistry
49(45):9756-69 (2010)
...
Konarev
PV, Urbaneja MA, Svergun DI, Taneva SG, Bañuelos S
R
g
Guinier
5.7
nm
D
max
19.0
nm
Volume
Porod
390
nm
3
SASDCC5
– Light encoded DNA biosensor: e14AB DNA
Sample:
e14AB monomer, 93 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
5.4
nm
D
max
24.7
nm
SASDAD5
– Nucleoplasmin_ImpA_ImpB
Sample:
Nucleoplasmin_importinA_importinB , 900 kDa
Escherichia coli
protein
Buffer:
50 mM Tris-HCL 150 mM NaCl 1.0 mM DTT, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2008 May 23
Recognition of nucleoplasmin by its nuclear transport receptor importin α/β: insights into a complete import complex.
Biochemistry
49(45):9756-69 (2010)
...
Konarev
PV, Urbaneja MA, Svergun DI, Taneva SG, Bañuelos S
R
g
Guinier
8.6
nm
D
max
28.0
nm
Volume
Porod
1800
nm
3
SASDCD5
– Light encoded DNA biosensor: e14ABC DNA
Sample:
e14ABC monomer, 106 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
4.7
nm
D
max
25.0
nm
Volume
Porod
152
nm
3
SASDCE5
– Light encoded DNA biosensor: e13A DNA
Sample:
e13A monomer, 17 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
2.3
nm
D
max
8.0
nm
Volume
Porod
24
nm
3
SASDCF5
– Light encoded DNA biosensor: e13B DNA
Sample:
e13B monomer, 10 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
1.8
nm
D
max
7.0
nm
Volume
Porod
13
nm
3
SASDMF5
– Two-component synthetic liposomes composed of 10% DOPS + 90% DOPC lipid mixtures loaded with M1 protein
Sample:
Two-component synthetic liposomes composed of 10% DOPS + 90% DOPC lipid mixtures loaded with M1 protein ((lipid:M1 molar ratio 20:1) monomer, 2000 kDa
Buffer:
100 mM NaCl, 50 mM MES buffer, pH: 6.8
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Oct 30
The Cytoplasmic Tail of Influenza A Virus Hemagglutinin and Membrane Lipid Composition Change the Mode of M1 Protein Association with the Lipid Bilayer
Membranes
11(10):772 (2021)
...
Konarev
P, Fedorova N, Shtykova E, Ksenofontov A, Loshkarev N, Dadinova L, Timofeeva T, Abramchuk S, Moiseenko A, Baratova L, Svergun D, Batishchev O
SASDAG5
– RNA shaperone Hfq
Sample:
RNA chaperone Hfq hexamer, 67 kDa
Escherichia coli
protein
Buffer:
50 mM Tris-HCL 150 mM NaCl 1.0 mM DTT, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2008 May 2
Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq.
Nucleic Acids Res
39(11):4900-15 (2011)
...
Konarev
PV, Sjöblom B, Kloiber K, Hämmerle H, Rajkowitsch L, Miles AJ, Kontaxis G, Wallace BA, Svergun DI, Konrat R, Bläsi U, Djinovic-Carugo K
R
g
Guinier
3.2
nm
D
max
11.2
nm
Volume
Porod
110
nm
3
SASDCG5
– Light encoded DNA biosensor: e13C DNA
Sample:
e13C monomer, 6 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
1.3
nm
D
max
5.0
nm
Volume
Porod
8
nm
3
SASDDG5
– Mammalian prion protein mRNA (PrP mRNA wild type)
Sample:
octo-repeat PrP mRNA dimer, 144 kDa
human PrP ORF
RNA
Buffer:
10 mM Tris buffer, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2016 Nov 4
Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes.
Sci Rep
9(1):2465 (2019)
...
Konarev
PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
R
g
Guinier
7.4
nm
D
max
25.0
nm
Volume
Porod
165
nm
3
SASDLG5
– Human nerve growth factor
Sample:
Beta-nerve growth factor dimer, 24 kDa
Homo sapiens
protein
Buffer:
50 mM Na-phosphate, 1 mM EDTA, pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Jul 2
The conundrum of the high-affinity NGF binding site formation unveiled?
Biophys J
108(3):687-97 (2015)
...
Konarev
PV, Cassetta A, Paoletti F, Svergun DI, Lamba D, Cattaneo A
R
g
Guinier
2.5
nm
SASDMG5
– Two-component synthetic liposomes composed of 30% DOPS + 70% DOPC lipid mixtures loaded with M1 protein
Sample:
Two-component synthetic liposomes composed of 30% DOPS + 70% DOPC lipid mixtures loaded with M1 protein (lipid:M1 molar ration 20:1) monomer, 2000 kDa
Buffer:
100 mM NaCl, 50 mM MES buffer, pH: 6.8
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Oct 31
The Cytoplasmic Tail of Influenza A Virus Hemagglutinin and Membrane Lipid Composition Change the Mode of M1 Protein Association with the Lipid Bilayer
Membranes
11(10):772 (2021)
...
Konarev
P, Fedorova N, Shtykova E, Ksenofontov A, Loshkarev N, Dadinova L, Timofeeva T, Abramchuk S, Moiseenko A, Baratova L, Svergun D, Batishchev O
SASDAH5
– Complex of Hfq with DsrA
Sample:
RNA chaperone Hfq hexamer, 67 kDa
Escherichia coli
protein
RNA DsrA monomer, 12 kDa RNA
Buffer:
50 mM Tris-HCL 150 mM NaCl 1.0 mM DTT, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2010 Nov 16
Structural flexibility of RNA as molecular basis for Hfq chaperone function.
Nucleic Acids Res
40(16):8072-84 (2012)
...
Konarev
PV, Shang W, Vecerek B, Kontaxis G, Hämmerle H, Peterlik H, Svergun DI, Bläsi U, Djinović-Carugo K
R
g
Guinier
4.3
nm
D
max
14.5
nm
Volume
Porod
210
nm
3
SASDCH5
– Light encoded DNA biosensor: e13AB DNA
Sample:
e13AB monomer, 79 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
4.7
nm
D
max
20.0
nm
Volume
Porod
103
nm
3
SASDDH5
– Mammalian prion protein mRNA (PrP mRNA wild type) with KCl
Sample:
octo-repeat PrP mRNA dimer, 144 kDa
human PrP ORF
RNA
Buffer:
10 mM Tris buffer with 100 mM KCl, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Jun 6
Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes.
Sci Rep
9(1):2465 (2019)
...
Konarev
PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
R
g
Guinier
8.8
nm
D
max
31.0
nm
Volume
Porod
240
nm
3
SASDLH5
– Aggregation state of Ataxin-3 protein
Sample:
Ataxin-3 monomer, 41 kDa
Homo sapiens
protein
Buffer:
phosphate buffered saline (PBS), pH: 7.4
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2009 Dec 3
Interactions of ataxin-3 with its molecular partners in the protein machinery that sorts protein aggregates to the aggresome.
Int J Biochem Cell Biol
51:58-64 (2014)
...
Konarev
PV, Invernizzi G, Svergun DI, Vanoni M, Regonesi ME, Tortora P
R
g
Guinier
6.9
nm
D
max
25.0
nm
Volume
Porod
425
nm
3
SASDMH5
– Four-component synthetic liposomes composed of 30% bPS + 10% POPC + 40% SM + 20% Chol lipid mixtures loaded with M1 protein
Sample:
Four-component synthetic liposomes composed of 30% bPS + 10% POPC + 40% SM + 20% Chol lipid mixtures loaded with M1 protein (lipid:M1 molar ration 20:1) monomer, 2000 kDa
Buffer:
100 mM NaCl, 50 mM MES buffer, pH: 6.8
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Oct 31
The Cytoplasmic Tail of Influenza A Virus Hemagglutinin and Membrane Lipid Composition Change the Mode of M1 Protein Association with the Lipid Bilayer
Membranes
11(10):772 (2021)
...
Konarev
P, Fedorova N, Shtykova E, Ksenofontov A, Loshkarev N, Dadinova L, Timofeeva T, Abramchuk S, Moiseenko A, Baratova L, Svergun D, Batishchev O
SASDCJ5
– Light encoded DNA biosensor: e13ABC DNA
Sample:
e13ABC monomer, 42 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2013 Nov 22
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
3.9
nm
D
max
18.0
nm
Volume
Porod
59
nm
3
SASDDJ5
– Mammalian prion protein mRNA (PrP mRNA wild type) with LiCl
Sample:
octo-repeat PrP mRNA dimer, 144 kDa
human PrP ORF
RNA
Buffer:
10 mM Tris buffer with 100 mM LiCl, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Jun 6
Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes.
Sci Rep
9(1):2465 (2019)
...
Konarev
PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
R
g
Guinier
9.0
nm
D
max
31.0
nm
Volume
Porod
225
nm
3
SASDLJ5
– Aggregation state of tubulin protein
Sample:
Tubulin alpha-1A chain monomer, 50 kDa
Homo sapiens
protein
Buffer:
phosphate buffered saline (PBS), pH: 7.4
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2009 Dec 3
Interactions of ataxin-3 with its molecular partners in the protein machinery that sorts protein aggregates to the aggresome.
Int J Biochem Cell Biol
51:58-64 (2014)
...
Konarev
PV, Invernizzi G, Svergun DI, Vanoni M, Regonesi ME, Tortora P
R
g
Guinier
7.0
nm
D
max
25.0
nm
Volume
Porod
340
nm
3
SASDMJ5
– Four-component synthetic liposomes composed of 20% bPS + 13.3% POPC + 33.3% SM + 33.3% Chol lipid mixtures loaded with M1 protein
Sample:
Four-component synthetic liposomes composed of 20% bPS + 13.3% POPC + 33.3% SM + 33.3% Chol lipid mixtures loaded with M1 protein (lipid:M1 molar ration 20:1) monomer, 2000 kDa
Buffer:
100 mM NaCl, 50 mM MES buffer, pH: 6.8
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Oct 31
The Cytoplasmic Tail of Influenza A Virus Hemagglutinin and Membrane Lipid Composition Change the Mode of M1 Protein Association with the Lipid Bilayer
Membranes
11(10):772 (2021)
...
Konarev
P, Fedorova N, Shtykova E, Ksenofontov A, Loshkarev N, Dadinova L, Timofeeva T, Abramchuk S, Moiseenko A, Baratova L, Svergun D, Batishchev O
SASDCK5
– Light encoded DNA biosensor: e13Ae14Be13C DNA
Sample:
e13Ae14Be13C monomer, 40 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
3.7
nm
D
max
18.0
nm
Volume
Porod
65
nm
3
SASDDK5
– Mammalian prion protein mRNA (PrP mRNA wild type) with KCl and pyridostatin (PDS)
Sample:
octo-repeat PrP mRNA dimer, 144 kDa
human PrP ORF
RNA
Buffer:
10 mM Tris buffer with 100 mM KCl and 1 mM PDS, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Jun 6
Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes.
Sci Rep
9(1):2465 (2019)
...
Konarev
PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
R
g
Guinier
9.1
nm
D
max
31.0
nm
Volume
Porod
220
nm
3
SASDLK5
– Aggregation state of ataxin-3-tubulin complex
Sample:
Ataxin-3 monomer, 41 kDa
Homo sapiens
protein
Tubulin alpha-1A chain monomer, 50 kDa
Homo sapiens
protein
Buffer:
phosphate buffered saline (PBS), pH: 7.4
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2009 Dec 3
Interactions of ataxin-3 with its molecular partners in the protein machinery that sorts protein aggregates to the aggresome.
Int J Biochem Cell Biol
51:58-64 (2014)
...
Konarev
PV, Invernizzi G, Svergun DI, Vanoni M, Regonesi ME, Tortora P
R
g
Guinier
8.4
nm
D
max
30.0
nm
Volume
Porod
900
nm
3
SASDMK5
– Native liposomes composed of lipids extracted from A/Puerto Rico/8/34 (H1N1) virus envelope loaded with M1 protein.
Sample:
Native liposomes composed of lipids extracted from A/Puerto Rico/8/34 (H1N1) virus envelope loaded with M1 protein. (lipid:M1 molar ration 4:1) monomer, 2000 kDa
Buffer:
100 mM NaCl, 50 mM MES buffer, pH: 6.8
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Nov 26
The Cytoplasmic Tail of Influenza A Virus Hemagglutinin and Membrane Lipid Composition Change the Mode of M1 Protein Association with the Lipid Bilayer
Membranes
11(10):772 (2021)
...
Konarev
P, Fedorova N, Shtykova E, Ksenofontov A, Loshkarev N, Dadinova L, Timofeeva T, Abramchuk S, Moiseenko A, Baratova L, Svergun D, Batishchev O
SASDCL5
– Light encoded DNA biosensor: e14Ae13Be14C DNA
Sample:
e14Ae13Be14C monomer, 31 kDa DNA
Buffer:
154 mM NaCl, pH: 8.3
Experiment:
SAXS data collected at BM29, ESRF
on 2016 Jun 16
Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.
ACS Chem Biol
13(5):1235-1242 (2018)
...
Konarev
PV, Lima JC, Santos-Silva T, Baptista PV
R
g
Guinier
3.4
nm
D
max
14.0
nm
Volume
Porod
42
nm
3
SASDDL5
– Mutant mammalian prion protein mRNA (octo-repeat PrP mRNA)
Sample:
octo-repeat PrP mRNA mutant dimer, 144 kDa
human PrP ORF
RNA
Buffer:
10 mM Tris buffer, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Jun 6
Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes.
Sci Rep
9(1):2465 (2019)
...
Konarev
PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
R
g
Guinier
7.0
nm
D
max
24.0
nm
Volume
Porod
150
nm
3
SASDLL5
– frataxin homolog, Yfh1, at 0 °C
Sample:
Frataxin homolog, mitochondrial monomer, 14 kDa
Saccharomyces cerevisiae (strain …
protein
Buffer:
20 mM HEPES, pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2008 Nov 28
The role of hydration in protein stability: comparison of the cold and heat unfolded states of Yfh1.
J Mol Biol
417(5):413-24 (2012)
...
Konarev
PV, Svergun DI, Daura X, Temussi P, Pastore A
R
g
Guinier
2.2
nm
SASDML5
– Proteoliposomes composed of lipids from A/Puerto Rico/8/34 (H1N1) virus envelope together with the HA LI45 peptides loaded with M1 protein
Sample:
Proteoliposomes composed of lipids from A/Puerto Rico/8/34 (H1N1) virus envelope together with the HA LI45 peptides loaded with M1 protein (lipid:M1 molar ration 4:1) monomer, 2000 kDa
Buffer:
100 mM NaCl, 50 mM MES buffer, pH: 6.8
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2018 Nov 26
The Cytoplasmic Tail of Influenza A Virus Hemagglutinin and Membrane Lipid Composition Change the Mode of M1 Protein Association with the Lipid Bilayer
Membranes
11(10):772 (2021)
...
Konarev
P, Fedorova N, Shtykova E, Ksenofontov A, Loshkarev N, Dadinova L, Timofeeva T, Abramchuk S, Moiseenko A, Baratova L, Svergun D, Batishchev O
SASDDM5
– Mutant mammalian prion protein mRNA (octo-repeat PrP mRNA) with KCl
Sample:
octo-repeat PrP mRNA mutant dimer, 144 kDa
human PrP ORF
RNA
Buffer:
10 mM Tris buffer with 100 mM KCl, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Jun 6
Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes.
Sci Rep
9(1):2465 (2019)
...
Konarev
PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
R
g
Guinier
9.0
nm
D
max
33.0
nm
Volume
Porod
210
nm
3
SASDLM5
– frataxin homolog, Yfh1, at 20 °C
Sample:
Frataxin homolog, mitochondrial monomer, 14 kDa
Saccharomyces cerevisiae (strain …
protein
Buffer:
20 mM HEPES, pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2008 Nov 28
The role of hydration in protein stability: comparison of the cold and heat unfolded states of Yfh1.
J Mol Biol
417(5):413-24 (2012)
...
Konarev
PV, Svergun DI, Daura X, Temussi P, Pastore A
R
g
Guinier
2.1
nm
SASDAN5
– Cross-linked complex CytC_Adr
Sample:
Cytochrome C monomer, 11 kDa
Escherichia coli
protein
Adrenodoxin monomer, 11 kDa
Escherichia coli
protein
Buffer:
20 mM HEPES 2 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2006 Jun 15
Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy.
J Am Chem Soc
130(20):6395-403 (2008)
...
Konarev
PV, Svergun DI, Bernhardt R, Ubbink M
R
g
Guinier
2.1
nm
D
max
8.5
nm
Volume
Porod
42
nm
3
SASDDN5
– Mutant mammalian prion protein mRNA (octo-repear PrP mRNA) with LiCl
Sample:
octo-repeat PrP mRNA mutant dimer, 144 kDa
human PrP ORF
RNA
Buffer:
10 mM Tris buffer with 100 mM LiCl, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Jun 6
Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes.
Sci Rep
9(1):2465 (2019)
...
Konarev
PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
R
g
Guinier
8.9
nm
D
max
33.0
nm
Volume
Porod
223
nm
3
SASDLN5
– frataxin homolog, Yfh1, at 50 °C
Sample:
Frataxin homolog, mitochondrial monomer, 14 kDa
Saccharomyces cerevisiae (strain …
protein
Buffer:
20 mM HEPES, pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2008 Nov 28
The role of hydration in protein stability: comparison of the cold and heat unfolded states of Yfh1.
J Mol Biol
417(5):413-24 (2012)
...
Konarev
PV, Svergun DI, Daura X, Temussi P, Pastore A
R
g
Guinier
2.5
nm
SASDAP5
– Native complex CytC_Adr
Sample:
Cytochrome C dimer dimer, 22 kDa
Escherichia coli
protein
Adrenodoxin dimer dimer, 22 kDa
Escherichia coli
protein
Buffer:
20 mM HEPES 2 mM DTT, pH: 7.4
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2006 Jun 15
Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy.
J Am Chem Soc
130(20):6395-403 (2008)
...
Konarev
PV, Svergun DI, Bernhardt R, Ubbink M
R
g
Guinier
2.9
nm
D
max
9.5
nm
Volume
Porod
64
nm
3
SASDDP5
– Mutant mammalian prion protein mRNA (octo-repear PrP mRNA) with KCl and pyridostatin (PDS)
Sample:
octo-repeat PrP mRNA mutant dimer, 144 kDa
human PrP ORF
RNA
Buffer:
10 mM Tris buffer with 100 mM KCl and 1 mM PDS, pH: 7.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2017 Jun 6
Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes.
Sci Rep
9(1):2465 (2019)
...
Konarev
PV, Goebel I, Svergun DI, Wills PR, Ignatova Z
R
g
Guinier
9.2
nm
D
max
33.0
nm
Volume
Porod
260
nm
3
SASDLP5
– Complex of the josephin domain of ataxin-3 with ubiquitin
Sample:
Josephin domain of ataxin-3 monomer, 21 kDa
Homo sapiens
protein
Polyubiquitin-B monomer, 9 kDa
Homo sapiens
protein
Buffer:
20 mM Na-phosphate, 2 mM DTT, pH: 6.5
Experiment:
SAXS data collected at EMBL P12, PETRA III
on 2013 Oct 7
Allosteric regulation of deubiquitylase activity through ubiquitination.
Front Mol Biosci
2:2 (2015)
...
Konarev
PV, Svergun DI, Paulson HL, Pastore A
R
g
Guinier
2.1
nm
D
max
6.5
nm
Volume
Porod
45
nm
3
SASDAQ5
– Lumazine Synthase
Sample:
Lumazine Synthase , 960 kDa
Bacillus subtilis
protein
Buffer:
Borate buffer, pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2004 Nov 25
Multiple assembly states of lumazine synthase: a model relating catalytic function and molecular assembly.
J Mol Biol
362(4):753-70 (2006)
...
Konarev
PV, Petoukhov MV, Svergun DI, Xing L, Cheng RH, Haase I, Fischer M, Bacher A, Ladenstein R, Meining W
R
g
Guinier
6.2
nm
D
max
15.5
nm
Volume
Porod
1450
nm
3
SASDLQ5
– Tricorn protease oligomers
Sample:
Tricorn protease hexamer, 730 kDa
Thermoplasma acidophilum (strain …
protein
Buffer:
20mM Tris-HCl, 100 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2003 Jan 14
X-ray snapshots of peptide processing in mutants of tricorn-interacting factor F1 from Thermoplasma acidophilum.
J Biol Chem
280(39):33387-96 (2005)
...
Konarev
PV, Svergun DI, Huber R, Kim JS
R
g
Guinier
5.9
nm
SASDAR5
– ProNGF
Sample:
ProNGF dimer, 45 kDa
Mouse submandibulary glands
protein
Buffer:
50 mM Naphosphat 0.5 M Ammonium Sulfate(NH4)2SO4, pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Oct 25
Intrinsic structural disorder of mouse proNGF.
Proteins
75(4):990-1009 (2009)
...
Konarev
PV, Gonfloni S, Malerba F, Schwarz E, Svergun DI, Cattaneo A, Lamba D
R
g
Guinier
2.6
nm
D
max
8.0
nm
Volume
Porod
92
nm
3
SASDLR5
– Multidomain Regulatory Protein Rv1364c (monomer)
Sample:
Multidomain regulatory protein Rv1364c monomer, 70 kDa
Mycobacterium tuberculosis (strain …
protein
Buffer:
25 mM Tris-HCl, 50 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Feb 14
Structural characterization of the multidomain regulatory protein Rv1364c from Mycobacterium tuberculosis.
Structure
19(1):56-69 (2011)
...
Konarev
PV, Panjikar S, Jordanova R, Svergun DI, Tucker PA
R
g
Guinier
3.8
nm
D
max
14.0
nm
Volume
Porod
130
nm
3
SASDAS5
– ad11 Fab
Sample:
aD11 Fab dimer, 50 kDa
Mus musculus
protein
Buffer:
50 mM Na-phosphate 1mM ethylenediaminetetraacetic aci, pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2005 Oct 20
Dissecting NGF interactions with TrkA and p75 receptors by structural and functional studies of an anti-NGF neutralizing antibody.
J Mol Biol
381(4):881-96 (2008)
...
Konarev
PV, Gonfloni S, Rudolph R, Svergun DI, Lamba D, Cattaneo A
R
g
Guinier
2.6
nm
D
max
8.0
nm
Volume
Porod
95
nm
3
SASDLS5
– Multidomain Regulatory Protein Rv1364c (dimer)
Sample:
Multidomain regulatory protein Rv1364c dimer, 139 kDa
Mycobacterium tuberculosis (strain …
protein
Buffer:
25 mM Tris-HCl, 50 mM NaCl, pH: 7.5
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Feb 14
Structural characterization of the multidomain regulatory protein Rv1364c from Mycobacterium tuberculosis.
Structure
19(1):56-69 (2011)
...
Konarev
PV, Panjikar S, Jordanova R, Svergun DI, Tucker PA
R
g
Guinier
4.5
nm
D
max
18.0
nm
Volume
Porod
289
nm
3
SASDAT5
– NGF
Sample:
NGF dimer, 50 kDa
Mus musculus
protein
Buffer:
10 mM Na-phosphate 150 mM NaCl, pH: 7.8
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2005 Oct 20
Dissecting NGF interactions with TrkA and p75 receptors by structural and functional studies of an anti-NGF neutralizing antibody.
J Mol Biol
381(4):881-96 (2008)
...
Konarev
PV, Gonfloni S, Rudolph R, Svergun DI, Lamba D, Cattaneo A
R
g
Guinier
3.1
nm
D
max
12.0
nm
Volume
Porod
102
nm
3
SASDLT5
– Modification methylase SsoII (M.SsoII) protein bound to 12-bp DNA
Sample:
Modification methylase SsoII monomer, 43 kDa
Shigella sonnei
protein
12-bp DNA monomer, 8 kDa DNA
Buffer:
50 mM Na-phosphate buffer, pH: 7
Experiment:
SAXS data collected at EMBL X33, DORIS III, DESY
on 2007 Mar 13
Flexibility of the linker between the domains of DNA methyltransferase SsoII revealed by small-angle X-ray scattering: implications for transcription regulation in SsoII restriction-modification syste...
PLoS One
9(4):e93453 (2014)
Konarev
PV, Kachalova GS, Ryazanova AY, Kubareva EA, Karyagina AS, Bartunik HD, Svergun DI
R
g
Guinier
2.8
nm
D
max
11.0
nm
Volume
Porod
85
nm
3
