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66 hits found for Shimizu

SASDTB2 – WAXS data of poly-histidine tagged Ribose binding protein (16 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 9
SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B
RgGuinier 2.5 nm
Dmax 12.0 nm
VolumePorod 36 nm3

SASDTC2 – WAXS data of poly-histidine tagged Ribose binding protein (20 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 9
SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 12.0 nm
VolumePorod 36 nm3

SASDTD2 – WAXS data of poly-histidine tagged Ribose binding protein (17 mg/mL) from Escherichia coli in the presence of 5 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: Tris 50 mM, 50 mM NaCl, 10% glycerol, 5 mM ribose, pH: 7
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 9
SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B
RgGuinier 1.9 nm
Dmax 10.7 nm
VolumePorod 25 nm3

SASDNJ2 – Circadian clock KaiA-KaiB-KaiC ternary protein complex measured by SEC-SAXS

Circadian clock protein KaiACircadian clock protein KaiBCircadian clock protein kinase KaiC (S431D mutant) experimental SAS data
OTHER model
Sample: Circadian clock protein KaiA dodecamer, 393 kDa Synechococcus elongatus (strain … protein
Circadian clock protein KaiB hexamer, 71 kDa Synechococcus elongatus (strain … protein
Circadian clock protein kinase KaiC (S431D mutant) hexamer, 357 kDa Synechococcus elongatus (strain … protein
Buffer: 50 mM sodium phosphate buffer, 150 mM NaCl, 5 mM MgCl2, 0.5 mM EDTA, 1 mM ATP, 1 mM DTT, 50 mM arginine, 50 mM glutamine, pH: 7.8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2017 Dec 8
Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach. Commun Biol 5(1):184 (2022)
...Shimizu M, Urade R, Terauchi K, Kono H, Yagi H, Kato K, Sugiyama M
RgGuinier 7.0 nm
Dmax 24.5 nm
VolumePorod 1650 nm3

SASDNK2 – Circadian clock hKaiA-75dKaiB-75dKaiC ternary protein complex measured by SEC-SANS in 100% D2O

75% deuterated Circadian clock protein KaiBCircadian clock protein KaiA75% deuterated Circadian clock protein kinase KaiC (S431D mutant) experimental SAS data
OTHER model
Sample: 75% deuterated Circadian clock protein KaiB hexamer, 71 kDa Synechococcus elongatus (strain … protein
Circadian clock protein KaiA dodecamer, 393 kDa Synechococcus elongatus (strain … protein
75% deuterated Circadian clock protein kinase KaiC (S431D mutant) hexamer, 357 kDa Synechococcus elongatus (strain … protein
Buffer: 50 mM sodium phosphate buffer, 150 mm NaCl, 5 mM MgCl2, 0.5 mM EDTA, 1 mM ATP, 1 mM DTT, 50 mM arginine, 50 mM glutamine, in 100% D2O, pH: 7.8
Experiment: SANS data collected at D22, Institut Laue-Langevin (ILL) on 2018 Sep 19
Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach. Commun Biol 5(1):184 (2022)
...Shimizu M, Urade R, Terauchi K, Kono H, Yagi H, Kato K, Sugiyama M
RgGuinier 7.8 nm
Dmax 25.6 nm
VolumePorod 1620 nm3

SASDU23 – Heterochromatin protein HP1α, S97A mutant, full-length (HP1α_S97A) in 50 mM NaCl

Heterochromatin protein HP1α, S97A mutant, full-length experimental SAS data
Heterochromatin protein HP1α, S97A mutant, full-length Kratky plot
Sample: Heterochromatin protein HP1α, S97A mutant, full-length dimer, 41 kDa Homo sapiens protein
Buffer: 20 mM sodium phosphate, 50 mM NaCl, 1 mM DTT, pH: 7
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2018 Jun 2
A dynamic structural unit of phase-separated heterochromatin protein 1α as revealed by integrative structural analyses Nucleic Acids Research 53(6) (2025)
...Shimizu K, Terada T, Shimizu N, Nishimura Y
RgGuinier 4.0 nm
Dmax 14.4 nm
VolumePorod 117 nm3

SASDU33 – Phosphorylated heterochromatin protein HP1α, S97A mutant, full-length (pHP1α_S97A) in 50 mM NaCl

phosphorylated Heterochromatin protein HP1α, S97A mutant, full-length experimental SAS data
phosphorylated Heterochromatin protein HP1α, S97A mutant, full-length Kratky plot
Sample: phosphorylated Heterochromatin protein HP1α, S97A mutant, full-length dimer, 41 kDa Homo sapiens protein
Buffer: 20 mM sodium phosphate, 50 mM NaCl, 1 mM DTT, pH: 7
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2018 Jun 2
A dynamic structural unit of phase-separated heterochromatin protein 1α as revealed by integrative structural analyses Nucleic Acids Research 53(6) (2025)
...Shimizu K, Terada T, Shimizu N, Nishimura Y
RgGuinier 3.8 nm
Dmax 19.5 nm
VolumePorod 129 nm3

SASDU43 – Heterochromatin protein HP1α, S97A mutant, full-length (HP1α_S97A) in 500 mM NaCl

Heterochromatin protein HP1α, S97A mutant, full-length experimental SAS data
Heterochromatin protein HP1α, S97A mutant, full-length Kratky plot
Sample: Heterochromatin protein HP1α, S97A mutant, full-length dimer, 41 kDa Homo sapiens protein
Buffer: 20 mM sodium phosphate, 500 mM NaCl, 1mM DTT, pH: 7
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2018 Nov 19
A dynamic structural unit of phase-separated heterochromatin protein 1α as revealed by integrative structural analyses Nucleic Acids Research 53(6) (2025)
...Shimizu K, Terada T, Shimizu N, Nishimura Y
RgGuinier 4.5 nm
Dmax 17.1 nm
VolumePorod 94 nm3

SASDD53 – Tetratrico peptide repeat domain of Bacterial cellulose synthesis subunit C

Bacterial cellulose synthesis subunit C experimental SAS data
DAMMIF model
Sample: Bacterial cellulose synthesis subunit C monomer, 71 kDa Enterobacter sp. CJF-002 protein
Buffer: 50 mM HEPES, 100 mM KCl, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2017 Apr 24
Crystal structure of the flexible tandem repeat domain of bacterial cellulose synthesis subunit C. Sci Rep 7(1):13018 (2017)
...Shimizu N, Yonezawa K, Tajima K, Yao M
RgGuinier 5.1 nm
Dmax 18.5 nm
VolumePorod 115 nm3

SASDU53 – Phosphorylated heterochromatin protein HP1α, S97A mutant, full-length (pHP1α_S97A) in 500 mM NaCl

phosphorylated Heterochromatin protein HP1α, S97A mutant, full-length experimental SAS data
phosphorylated Heterochromatin protein HP1α, S97A mutant, full-length Kratky plot
Sample: phosphorylated Heterochromatin protein HP1α, S97A mutant, full-length dimer, 41 kDa Homo sapiens protein
Buffer: 20 mM sodium phosphate, 500 mM NaCl, 1mM DTT, pH: 7
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2018 Nov 19
A dynamic structural unit of phase-separated heterochromatin protein 1α as revealed by integrative structural analyses Nucleic Acids Research 53(6) (2025)
...Shimizu K, Terada T, Shimizu N, Nishimura Y
RgGuinier 4.6 nm
Dmax 17.7 nm
VolumePorod 104 nm3

SASDU63 – Heterochromatin protein HP1α, delta CSD mutant, in 50 mM NaCl

Heterochromatin protein HP1α, delta CSD mutant experimental SAS data
Heterochromatin protein HP1α, delta CSD mutant Kratky plot
Sample: Heterochromatin protein HP1α, delta CSD mutant monomer, 13 kDa Homo sapiens protein
Buffer: 20 mM sodium phosphate, 50 mM NaCl, 1 mM DTT, pH: 7
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 27
A dynamic structural unit of phase-separated heterochromatin protein 1α as revealed by integrative structural analyses Nucleic Acids Research 53(6) (2025)
...Shimizu K, Terada T, Shimizu N, Nishimura Y
RgGuinier 2.8 nm
Dmax 13.0 nm
VolumePorod 23 nm3

SASDU73 – Phosphorylated heterochromatin protein HP1α, delta CSD mutant, in 50 mM NaCl

phosphorylated Heterochromatin protein HP1α, delta CSD mutant experimental SAS data
phosphorylated Heterochromatin protein HP1α, delta CSD mutant Kratky plot
Sample: phosphorylated Heterochromatin protein HP1α, delta CSD mutant monomer, 13 kDa Homo sapiens protein
Buffer: 20 mM sodium phosphate, 50 mM NaCl, 1 mM DTT, pH: 7
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 27
A dynamic structural unit of phase-separated heterochromatin protein 1α as revealed by integrative structural analyses Nucleic Acids Research 53(6) (2025)
...Shimizu K, Terada T, Shimizu N, Nishimura Y
RgGuinier 3.0 nm
Dmax 14.4 nm
VolumePorod 44 nm3

SASDU83 – Phosphorylated heterochromatin protein HP1α, delta CSD b4 mutant, in 50 mM NaCl

phosphorylated Heterochromatin protein HP1α, delta CSD b4 mutant experimental SAS data
phosphorylated Heterochromatin protein HP1α, delta CSD b4 mutant Kratky plot
Sample: phosphorylated Heterochromatin protein HP1α, delta CSD b4 mutant monomer, 13 kDa Homo sapiens protein
Buffer: 20 mM sodium phosphate, 50 mM NaCl, 1 mM DTT, pH: 7
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 27
A dynamic structural unit of phase-separated heterochromatin protein 1α as revealed by integrative structural analyses Nucleic Acids Research 53(6) (2025)
...Shimizu K, Terada T, Shimizu N, Nishimura Y
RgGuinier 2.7 nm
Dmax 13.0 nm
VolumePorod 34 nm3

SASDWA3 – Ovalbumin, Monomer from SEC-SANS

Ovalbumin experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Ovalbumin monomer, 43 kDa Gallus gallus protein
Buffer: 100 mM Tris-HCl, 100 mM NaCl in 100% v/v D₂O, pH: 7.5
Experiment: SANS data collected at SANS-U, JRR-3 (Japan Atomic Energy Agency) on 2024 Apr 22
Size-exclusion chromatography–small-angle neutron scattering system optimized for an instrument with medium neutron flux Journal of Applied Crystallography 58(2) (2025)
...Shimizu M, Sakamoto R, Oda T, Mayumi K, Sugiyama M
RgGuinier 2.0 nm
Dmax 6.5 nm

SASDWB3 – Bovine serum albumin, monomer from SEC-SANS

Albumin (natural variant A214T) experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Albumin (natural variant A214T) monomer, 66 kDa Bos taurus protein
Buffer: 100 mM Tris-HCl, 100 mM NaCl in 100% v/v D₂O, pH: 7.5
Experiment: SANS data collected at SANS-U, JRR-3 (Japan Atomic Energy Agency) on 2024 Apr 22
Size-exclusion chromatography–small-angle neutron scattering system optimized for an instrument with medium neutron flux Journal of Applied Crystallography 58(2) (2025)
...Shimizu M, Sakamoto R, Oda T, Mayumi K, Sugiyama M
RgGuinier 2.6 nm
Dmax 8.7 nm

SASDWC3 – Apoferritin, from SEC-SANS

Ferritin light chain experimental SAS data
PDB (PROTEIN DATA BANK) model
Sample: Ferritin light chain 24-mer, 476 kDa Equus caballus protein
Buffer: 100 mM Tris-HCl, 100 mM NaCl in 100% v/v D₂O, pH: 7.5
Experiment: SANS data collected at SANS-U, JRR-3 (Japan Atomic Energy Agency) on 2024 Apr 22
Size-exclusion chromatography–small-angle neutron scattering system optimized for an instrument with medium neutron flux Journal of Applied Crystallography 58(2) (2025)
...Shimizu M, Sakamoto R, Oda T, Mayumi K, Sugiyama M
RgGuinier 5.4 nm
Dmax 23.1 nm

SASDWD3 – Cyanobacterial circadian clock protein KaiB-KaiC complex (hydrogenated-KaiB and hydrogenated-KaiC in 100% v/v D₂O ) measured by SEC-SANS

Circadian clock oscillator protein KaiBCircadian clock oscillator protein KaiC experimental SAS data
Circadian clock oscillator protein KaiB Circadian clock oscillator protein KaiC Kratky plot
Sample: Circadian clock oscillator protein KaiB hexamer, 71 kDa Synechococcus sp. (strain … protein
Circadian clock oscillator protein KaiC hexamer, 356 kDa Synechococcus elongatus (strain … protein
Buffer: 50 mM sodium phosphate buffer, 150 mM NaCl, 5 mM MgCl₂, 0.5 mM EDTA, 1 mM ATP, 1 mM DTT, 50 mM arginine, 50 mM glutamine, in 100% D₂O, pH: 7.8
Experiment: SANS data collected at SANS-U, JRR-3 (Japan Atomic Energy Agency) on 2024 Jul 2
Size-exclusion chromatography–small-angle neutron scattering system optimized for an instrument with medium neutron flux Journal of Applied Crystallography 58(2) (2025)
...Shimizu M, Sakamoto R, Oda T, Mayumi K, Sugiyama M
RgGuinier 4.9 nm
Dmax 14.4 nm

SASDWE3 – Cyanobacterial circadian clock protein KaiB-KaiC complex (71% deuterated-KaiB and hydrogenated-KaiC in 100% v/v D₂O ) measured by SEC-SANS

Circadian clock oscillator protein KaiBCircadian clock oscillator protein KaiC experimental SAS data
Circadian clock oscillator protein KaiB Circadian clock oscillator protein KaiC Kratky plot
Sample: Circadian clock oscillator protein KaiB hexamer, 71 kDa Synechococcus sp. (strain … protein
Circadian clock oscillator protein KaiC hexamer, 356 kDa Synechococcus elongatus (strain … protein
Buffer: 50 mM sodium phosphate buffer, 150 mM NaCl, 5 mM MgCl₂, 0.5 mM EDTA, 1 mM ATP, 1 mM DTT, 50 mM arginine, 50 mM glutamine, in 100% D₂O, pH: 7.8
Experiment: SANS data collected at SANS-U, JRR-3 (Japan Atomic Energy Agency) on 2024 Jul 2
Size-exclusion chromatography–small-angle neutron scattering system optimized for an instrument with medium neutron flux Journal of Applied Crystallography 58(2) (2025)
...Shimizu M, Sakamoto R, Oda T, Mayumi K, Sugiyama M
RgGuinier 4.3 nm
Dmax 11.7 nm

SASDWF3 – Circadian clock protein KaiC (hydrogenated-KaiC in 100% v/v D₂O ) measured by SEC-SANS

Circadian clock oscillator protein KaiC experimental SAS data
Circadian clock oscillator protein KaiC Kratky plot
Sample: Circadian clock oscillator protein KaiC hexamer, 356 kDa Synechococcus elongatus (strain … protein
Buffer: 50 mM sodium phosphate buffer, 150 mM NaCl, 5 mM MgCl₂, 0.5 mM EDTA, 1 mM ATP, 1 mM DTT, 50 mM arginine, 50 mM glutamine, in 100% D₂O, pH: 7.8
Experiment: SANS data collected at SANS-U, JRR-3 (Japan Atomic Energy Agency) on 2024 Jul 2
Size-exclusion chromatography–small-angle neutron scattering system optimized for an instrument with medium neutron flux Journal of Applied Crystallography 58(2) (2025)
...Shimizu M, Sakamoto R, Oda T, Mayumi K, Sugiyama M
RgGuinier 4.4 nm
Dmax 11.9 nm

SASDDR3 – Yeast tRNA Nm34 methyltransferase Trm7-Trm734 complex from Sacharomyces cerevisiae

Trm7: tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferaseTrm734: Regulator of Ty1 transposition protein 10 experimental SAS data
CORAL model
Sample: Trm7: tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase monomer, 36 kDa Saccharomyces cerevisiae protein
Trm734: Regulator of Ty1 transposition protein 10 monomer, 116 kDa Saccharomyces cerevisiae protein
Buffer: 50 mM HEPES, 200 mM KCl, 5% v/v Glycerol, 10mM β-mercaptoethanol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2015 Dec 16
Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition. Nucleic Acids Res (2019)
...Shimizu N, Hori H
RgGuinier 3.8 nm
Dmax 13.0 nm
VolumePorod 218 nm3

SASDFR4 – HP2042 form from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, Trp repressor from Escherichia coli (Domain A (PDB:3MLI)-Linker (PDB:1BR0)-Domain B (PDB:1WRT))

HP2042 form from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, Trp repressor from Escherichia coli experimental SAS data
CORAL model
Sample: HP2042 form from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, Trp repressor from Escherichia coli tetramer, 150 kDa Helicobacter pylori, Rattus … protein
Buffer: 20 mM Tris-HCl 150 mM NaCl, pH: 8
Experiment: SAXS data collected at Rigaku Nano-Viewer, Nara Institute of Science and Technology on 2016 Dec 8
Construction of a Quadrangular Tetramer and a Cage-Like Hexamer from Three-Helix Bundle-Linked Fusion Proteins. ACS Synth Biol (2019)
...Shimizu N, Kamikubo H, Hirota S
RgGuinier 5.1 nm
Dmax 20.0 nm
VolumePorod 379 nm3

SASDFS4 – HP0242 from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, de novo designed coiled-coil trimer domain (Domain A (PDB:3MLI)-Linker (PDB:1BR0)-Domain B (PDB:4DZL))

HP0242 from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, de novo designed coiled-coil trimer domain experimental SAS data
CORAL model
Sample: HP0242 from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, de novo designed coiled-coil trimer domain hexamer, 179 kDa Helicobacter pylori, Rattus … protein
Buffer: 20 mM Tris-HCl 150 mM NaCl, pH: 8
Experiment: SAXS data collected at Rigaku Nano-Viewer, Nara Institute of Science and Technology on 2017 Mar 29
Construction of a Quadrangular Tetramer and a Cage-Like Hexamer from Three-Helix Bundle-Linked Fusion Proteins. ACS Synth Biol (2019)
...Shimizu N, Kamikubo H, Hirota S
RgGuinier 6.5 nm
Dmax 24.0 nm
VolumePorod 642 nm3

SASDN55 – A recoverin homology domain with EF hand domain of diacylglycerol kinase alpha under the condition with CaCl2

Diacylglycerol kinase alpha experimental SAS data
DAMMIF model
Sample: Diacylglycerol kinase alpha monomer, 22 kDa Homo sapiens protein
Buffer: 20 mM TrisHCl, 200 mM NaCl, 5 mM DTT, 5% v/v glycerol, 3 mM CaCl2, pH: 7.4
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Dec 8
Ca 2+ ‐induced structural changes and intramolecular interactions in N‐terminal region of diacylglycerol kinase alpha Protein Science 31(7) (2022)
...Shimizu N
RgGuinier 1.9 nm
Dmax 6.2 nm
VolumePorod 44 nm3

SASDN65 – A recoverin homology domain with EF hand domain of diacylglycerol kinase alpha under the condition without CaCl2

Diacylglycerol kinase alpha experimental SAS data
DAMMIF model
Sample: Diacylglycerol kinase alpha monomer, 22 kDa Homo sapiens protein
Buffer: 20mM TrisHCl, 200mM NaCl, 5mM DTT, 5% v/v Glycerol, 3mM EGTA, pH: 7.4
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Dec 8
Ca 2+ ‐induced structural changes and intramolecular interactions in N‐terminal region of diacylglycerol kinase alpha Protein Science 31(7) (2022)
...Shimizu N
RgGuinier 1.9 nm
Dmax 7.0 nm
VolumePorod 44 nm3

SASDTK5 – Heme acquisition system protein A (39.9 kDa dimer from Pseudomonas protegens PF-5)

Heme acquisition protein HasAp experimental SAS data
DAMMIN model
Sample: Heme acquisition protein HasAp dimer, 38 kDa Pseudomonas fluorescens (strain … protein
Buffer: 50 mM CHES, 5 % glycerol, pH: 9.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2023 Feb 24
Heme-substituted protein assembly bridged by synthetic porphyrin: achieving controlled configuration while maintaining rotational freedom RSC Advances 14(13):8829-8836 (2024)
...Shimizu N, Sugimoto H, Shoji O
RgGuinier 2.8 nm
Dmax 9.1 nm
VolumePorod 54 nm3

SASDMV5 – Kinesin superfamily protein 3 A/B and kinesin associated protein 3 (KAP)

Kinesin-like protein KIF3BKinesin-associated protein 3Kinesin-like protein KIF3A experimental SAS data
DAMMIF model
Sample: Kinesin-like protein KIF3B monomer, 32 kDa Mus musculus protein
Kinesin-associated protein 3 monomer, 81 kDa Mus musculus protein
Kinesin-like protein KIF3A monomer, 28 kDa Mus musculus protein
Buffer: 20 mM Tris-HCl, 200 mM NaCl, 5% glycerol, 1 mM DTT, pH: 8
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Jun 24
The two-step cargo recognition mechanism of heterotrimeric kinesin. EMBO Rep :e56864 (2023)
...Shimizu N, Ichinose S, Uchihashi T, Nagaike W, Moriya T, Adachi N, Kawasaki M, Dohmae N, Senda T, Hirokawa N
RgGuinier 5.8 nm
Dmax 27.0 nm
VolumePorod 557 nm3

SASDMW5 – Kinesin superfamily protein 3 A/B and kinesin associated protein 3 (KAP) with APC ARM

Adenomatous polyposis coli protein (N-terminal ARM domain)Kinesin-like protein KIF3AKinesin-like protein KIF3BKinesin-associated protein 3 experimental SAS data
DAMMIF model
Sample: Adenomatous polyposis coli protein (N-terminal ARM domain) monomer, 75 kDa Mus musculus protein
Kinesin-like protein KIF3A monomer, 28 kDa Mus musculus protein
Kinesin-like protein KIF3B monomer, 32 kDa Mus musculus protein
Kinesin-associated protein 3 monomer, 81 kDa Mus musculus protein
Buffer: 25 mM Tris-HCl, 200 mM NaCl, 1 mM DTT, 5% glycerol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 17
The two-step cargo recognition mechanism of heterotrimeric kinesin. EMBO Rep :e56864 (2023)
...Shimizu N, Ichinose S, Uchihashi T, Nagaike W, Moriya T, Adachi N, Kawasaki M, Dohmae N, Senda T, Hirokawa N
RgGuinier 5.4 nm
Dmax 19.5 nm
VolumePorod 763 nm3

SASDMY7 – Poly-histidine tagged Myosin X component at 8979 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 8.5 nm
VolumePorod 24 nm3

SASDMZ7 – Poly-histidine tagged Myosin X component at 8981 eV

Unconventional myosin-X experimental SAS data
Unconventional myosin-X Kratky plot
Sample: Unconventional myosin-X dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 8.0 nm
VolumePorod 24 nm3

SASDM28 – Poly-histidine tagged Myosin X component at 8983 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 8.0 nm
VolumePorod 24 nm3

SASDM38 – Poly-histidine tagged Myosin X component at 8985 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 8.0 nm
VolumePorod 24 nm3

SASDM48 – Poly-histidine tagged Myosin X component at 8987 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 8.0 nm
VolumePorod 24 nm3

SASDM58 – Poly-histidine tagged Myosin X component at 8989 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 8.0 nm
VolumePorod 24 nm3

SASDM68 – Poly-histidine tagged Myosin X component at 8991 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 8.0 nm
VolumePorod 24 nm3

SASDM78 – Poly-histidine tagged Myosin X component at 8993 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.2 nm
Dmax 8.0 nm

SASDM88 – Poly-histidine tagged Myosin X component with CuSO4 at 8979 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.4 nm
Dmax 10.5 nm
VolumePorod 27 nm3

SASDM98 – Poly-histidine tagged Myosin X component with CuSO4 at 8981 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.5 nm
Dmax 11.5 nm
VolumePorod 27 nm3

SASDMA8 – Poly-histidine tagged Myosin X component with CuSO4 at 8983 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.4 nm
Dmax 10.5 nm
VolumePorod 27 nm3

SASDMB8 – Poly-histidine tagged Myosin X component with CuSO4 at 8985 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.5 nm
Dmax 11.5 nm
VolumePorod 27 nm3

SASDMC8 – Poly-histidine tagged Myosin X component with CuSO4 at 8987 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.4 nm
Dmax 11.0 nm
VolumePorod 28 nm3

SASDMD8 – Poly-histidine tagged Myosin X component with CuSO4 at 8989 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.4 nm
Dmax 11.5 nm
VolumePorod 27 nm3

SASDME8 – Poly-histidine tagged Myosin X component with CuSO4 at 8991 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.4 nm
Dmax 11.5 nm
VolumePorod 28 nm3

SASDMF8 – Poly-histidine tagged Myosin X component with CuSO4 at 8993 eV

Unconventional myosin-X component experimental SAS data
Unconventional myosin-X component Kratky plot
Sample: Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer: HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16
K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B
RgGuinier 2.4 nm
Dmax 11.5 nm
VolumePorod 28 nm3

SASDQQ8 – Endo-D-arabinanase, 54 kDa, dimer, Microbacterium arabinogalactanolyticum

Endo-D-arabinanase experimental SAS data
REFMAC model
Sample: Endo-D-arabinanase dimer, 107 kDa Microbacterium arabinogalactanolyticum protein
Buffer: 20 mM Tris-HCl, 200 mM NaCl, pH: 7.5
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2022 Nov 3
Identification and characterization of endo-α-, exo-α-, and exo-β-d-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria Nature Communications 14(1) (2023)
...Shimizu N, Arakawa T, Yamada C, Kitahara K, Tanaka K, Ito Y, Fushinobu S, Fujita K
RgGuinier 3.1 nm
Dmax 10.4 nm
VolumePorod 131 nm3

SASDSB9 – SAXS data of poly-histidine tagged Ribose Binding Protein (9 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 8.6 nm
VolumePorod 35 nm3

SASDSC9 – SAXS data of poly-histidine tagged Ribose Binding Protein (6 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 8.4 nm
VolumePorod 37 nm3

SASDSD9 – SAXS data of poly-histidine tagged Ribose Binding Protein (3 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data
Ribose import binding protein RbsB Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 8.3 nm
VolumePorod 39 nm3

SASDSE9 – SAXS data of poly-histidine tagged Ribose Binding Protein (9 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B
RgGuinier 2.0 nm
Dmax 8.3 nm
VolumePorod 35 nm3

SASDSF9 – SAXS data of poly-histidine tagged Ribose Binding Protein (6 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B
RgGuinier 2.0 nm
Dmax 7.6 nm
VolumePorod 36 nm3

SASDSG9 – SAXS data of poly-histidine tagged Ribose Binding Protein (3 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data
Ribose import binding protein RbsB Ribose Kratky plot
Sample: Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Ribose monomer, 0 kDa
Buffer: 50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment: SAXS data collected at BM29, ESRF on 2017 Dec 15
SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B
RgGuinier 2.1 nm
Dmax 7.4 nm
VolumePorod 39 nm3

SASDLD8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.270)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
ROSETTA model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 2.2 nm

SASDLE8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.280)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
ROSETTA model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 2.2 nm

SASDLF8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.290)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
ROSETTA model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 2.1 nm

SASDLG8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.300)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
ROSETTA model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 2.0 nm

SASDLH8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.310)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
ROSETTA model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 1.9 nm

SASDLJ8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.320)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
ROSETTA model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 2.0 nm

SASDLK8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.330)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
ROSETTA model
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 2.0 nm

SASDL58 – The Fe–S cluster assembly 1 homolog of pigeon before applying the external magnetic field (0 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 4.7 nm
Dmax 15.8 nm

SASDL68 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 5 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 5.0 nm
Dmax 16.2 nm

SASDL78 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 10 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 4.9 nm
Dmax 16.5 nm

SASDL88 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 30 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 5.1 nm
Dmax 17.2 nm

SASDL98 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 60 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 5.5 nm
Dmax 19.1 nm

SASDLA8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 5 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 5.7 nm
Dmax 18.9 nm

SASDLL8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 10 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 5.7 nm
Dmax 18.9 nm

SASDLB8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 30 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 5.4 nm
Dmax 19.0 nm

SASDLC8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 60 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data
Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot
Sample: Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer: 20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30
Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M
RgGuinier 5.7 nm
Dmax 21.2 nm