Small Angle Scattering Biological Data Bank SASBDB


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53 hits found for Shimizu

SASDTB2 – WAXS data of poly-histidine tagged Ribose binding protein (16 mg/mL) from Escherichia coli

Ribose import binding protein RbsB experimental SAS data

Ribose import binding protein RbsB Kratky plot

Sample:	Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer:	50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 9

SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.5	nm
D_max	12.0	nm
Volume^Porod	36	nm³

SASDTC2 – WAXS data of poly-histidine tagged Ribose binding protein (20 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Ribose import binding protein RbsBRibose experimental SAS data

Ribose import binding protein RbsB Ribose Kratky plot

Sample:	Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein Ribose monomer, 0 kDa
Buffer:	50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 9

SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.2	nm
D_max	12.0	nm
Volume^Porod	36	nm³

SASDTD2 – WAXS data of poly-histidine tagged Ribose binding protein (17 mg/mL) from Escherichia coli in the presence of 5 mM ribose

Sample:	Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein Ribose monomer, 0 kDa
Buffer:	Tris 50 mM, 50 mM NaCl, 10% glycerol, 5 mM ribose, pH: 7
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2019 Dec 9

SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B

R_g^Guinier	1.9	nm
D_max	10.7	nm
Volume^Porod	25	nm³

SASDNJ2 – Circadian clock KaiA-KaiB-KaiC ternary protein complex measured by SEC-SAXS

Circadian clock protein KaiACircadian clock protein KaiBCircadian clock protein kinase KaiC (S431D mutant) experimental SAS data

Sample:	Circadian clock protein KaiA dodecamer, 393 kDa Synechococcus elongatus (strain … protein Circadian clock protein KaiB hexamer, 71 kDa Synechococcus elongatus (strain … protein Circadian clock protein kinase KaiC (S431D mutant) hexamer, 357 kDa Synechococcus elongatus (strain … protein
Buffer:	50 mM sodium phosphate buffer, 150 mM NaCl, 5 mM MgCl2, 0.5 mM EDTA, 1 mM ATP, 1 mM DTT, 50 mM arginine, 50 mM glutamine, pH: 7.8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2017 Dec 8

Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach. Commun Biol 5(1):184 (2022)
...Shimizu M, Urade R, Terauchi K, Kono H, Yagi H, Kato K, Sugiyama M

R_g^Guinier	7.0	nm
D_max	24.5	nm
Volume^Porod	1650	nm³

SASDNK2 – Circadian clock hKaiA-75dKaiB-75dKaiC ternary protein complex measured by SEC-SANS in 100% D2O

75% deuterated Circadian clock protein KaiBCircadian clock protein KaiA75% deuterated Circadian clock protein kinase KaiC (S431D mutant) experimental SAS data

Sample:	75% deuterated Circadian clock protein KaiB hexamer, 71 kDa Synechococcus elongatus (strain … protein Circadian clock protein KaiA dodecamer, 393 kDa Synechococcus elongatus (strain … protein 75% deuterated Circadian clock protein kinase KaiC (S431D mutant) hexamer, 357 kDa Synechococcus elongatus (strain … protein
Buffer:	50 mM sodium phosphate buffer, 150 mm NaCl, 5 mM MgCl2, 0.5 mM EDTA, 1 mM ATP, 1 mM DTT, 50 mM arginine, 50 mM glutamine, in 100% D2O, pH: 7.8
Experiment:	SANS data collected at D22, Institut Laue-Langevin (ILL) on 2018 Sep 19

R_g^Guinier	7.8	nm
D_max	25.6	nm
Volume^Porod	1620	nm³

SASDD53 – Tetratrico peptide repeat domain of Bacterial cellulose synthesis subunit C

Bacterial cellulose synthesis subunit C experimental SAS data

Sample:	Bacterial cellulose synthesis subunit C monomer, 71 kDa Enterobacter sp. CJF-002 protein
Buffer:	50 mM HEPES, 100 mM KCl, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2017 Apr 24

Crystal structure of the flexible tandem repeat domain of bacterial cellulose synthesis subunit C. Sci Rep 7(1):13018 (2017)
...Shimizu N, Yonezawa K, Tajima K, Yao M

R_g^Guinier	5.1	nm
D_max	18.5	nm
Volume^Porod	115	nm³

SASDDR3 – Yeast tRNA Nm34 methyltransferase Trm7-Trm734 complex from Sacharomyces cerevisiae

Trm7: tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferaseTrm734: Regulator of Ty1 transposition protein 10 experimental SAS data

Sample:	Trm7: tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase monomer, 36 kDa Saccharomyces cerevisiae protein Trm734: Regulator of Ty1 transposition protein 10 monomer, 116 kDa Saccharomyces cerevisiae protein
Buffer:	50 mM HEPES, 200 mM KCl, 5% v/v Glycerol, 10mM β-mercaptoethanol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2015 Dec 16

Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition. Nucleic Acids Res (2019)
...Shimizu N, Hori H

R_g^Guinier	3.8	nm
D_max	13.0	nm
Volume^Porod	218	nm³

SASDFR4 – HP2042 form from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, Trp repressor from Escherichia coli (Domain A (PDB:3MLI)-Linker (PDB:1BR0)-Domain B (PDB:1WRT))

HP2042 form from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, Trp repressor from Escherichia coli experimental SAS data

Sample:	HP2042 form from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, Trp repressor from Escherichia coli tetramer, 150 kDa Helicobacter pylori, Rattus … protein
Buffer:	20 mM Tris-HCl 150 mM NaCl, pH: 8
Experiment:	SAXS data collected at Rigaku Nano-Viewer, Nara Institute of Science and Technology on 2016 Dec 8

Construction of a Quadrangular Tetramer and a Cage-Like Hexamer from Three-Helix Bundle-Linked Fusion Proteins. ACS Synth Biol (2019)
...Shimizu N, Kamikubo H, Hirota S

R_g^Guinier	5.1	nm
D_max	20.0	nm
Volume^Porod	379	nm³

SASDFS4 – HP0242 from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, de novo designed coiled-coil trimer domain (Domain A (PDB:3MLI)-Linker (PDB:1BR0)-Domain B (PDB:4DZL))

HP0242 from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, de novo designed coiled-coil trimer domain experimental SAS data

Sample:	HP0242 from Helicobacter pylori, N-terminal domain of syntaxin-1A from Rattus norvegicus, de novo designed coiled-coil trimer domain hexamer, 179 kDa Helicobacter pylori, Rattus … protein
Buffer:	20 mM Tris-HCl 150 mM NaCl, pH: 8
Experiment:	SAXS data collected at Rigaku Nano-Viewer, Nara Institute of Science and Technology on 2017 Mar 29

Construction of a Quadrangular Tetramer and a Cage-Like Hexamer from Three-Helix Bundle-Linked Fusion Proteins. ACS Synth Biol (2019)
...Shimizu N, Kamikubo H, Hirota S

R_g^Guinier	6.5	nm
D_max	24.0	nm
Volume^Porod	642	nm³

SASDN55 – A recoverin homology domain with EF hand domain of diacylglycerol kinase alpha under the condition with CaCl2

Diacylglycerol kinase alpha experimental SAS data

Sample:	Diacylglycerol kinase alpha monomer, 22 kDa Homo sapiens protein
Buffer:	20 mM TrisHCl, 200 mM NaCl, 5 mM DTT, 5% v/v glycerol, 3 mM CaCl2, pH: 7.4
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Dec 8

Ca 2+ ‐induced structural changes and intramolecular interactions in N‐terminal region of diacylglycerol kinase alpha Protein Science 31(7) (2022)
...Shimizu N

R_g^Guinier	1.9	nm
D_max	6.2	nm
Volume^Porod	44	nm³

SASDN65 – A recoverin homology domain with EF hand domain of diacylglycerol kinase alpha under the condition without CaCl2

Sample:	Diacylglycerol kinase alpha monomer, 22 kDa Homo sapiens protein
Buffer:	20mM TrisHCl, 200mM NaCl, 5mM DTT, 5% v/v Glycerol, 3mM EGTA, pH: 7.4
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Dec 8

Ca 2+ ‐induced structural changes and intramolecular interactions in N‐terminal region of diacylglycerol kinase alpha Protein Science 31(7) (2022)
...Shimizu N

R_g^Guinier	1.9	nm
D_max	7.0	nm
Volume^Porod	44	nm³

SASDTK5 – Heme acquisition system protein A (39.9 kDa dimer from Pseudomonas protegens PF-5)

Heme acquisition protein HasAp experimental SAS data

Sample:	Heme acquisition protein HasAp dimer, 38 kDa Pseudomonas fluorescens (strain … protein
Buffer:	50 mM CHES, 5 % glycerol, pH: 9.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2023 Feb 24

Heme-substituted protein assembly bridged by synthetic porphyrin: achieving controlled configuration while maintaining rotational freedom RSC Advances 14(13):8829-8836 (2024)
...Shimizu N, Sugimoto H, Shoji O

R_g^Guinier	2.8	nm
D_max	9.1	nm
Volume^Porod	54	nm³

SASDMV5 – Kinesin superfamily protein 3 A/B and kinesin associated protein 3 (KAP)

Kinesin-like protein KIF3BKinesin-associated protein 3Kinesin-like protein KIF3A experimental SAS data

Sample:	Kinesin-like protein KIF3B monomer, 32 kDa Mus musculus protein Kinesin-associated protein 3 monomer, 81 kDa Mus musculus protein Kinesin-like protein KIF3A monomer, 28 kDa Mus musculus protein
Buffer:	20 mM Tris-HCl, 200 mM NaCl, 5% glycerol, 1 mM DTT, pH: 8
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Jun 24

The two-step cargo recognition mechanism of heterotrimeric kinesin. EMBO Rep :e56864 (2023)
...Shimizu N, Ichinose S, Uchihashi T, Nagaike W, Moriya T, Adachi N, Kawasaki M, Dohmae N, Senda T, Hirokawa N

R_g^Guinier	5.8	nm
D_max	27.0	nm
Volume^Porod	557	nm³

SASDMW5 – Kinesin superfamily protein 3 A/B and kinesin associated protein 3 (KAP) with APC ARM

Adenomatous polyposis coli protein (N-terminal ARM domain)Kinesin-like protein KIF3AKinesin-like protein KIF3BKinesin-associated protein 3 experimental SAS data

Sample:	Adenomatous polyposis coli protein (N-terminal ARM domain) monomer, 75 kDa Mus musculus protein Kinesin-like protein KIF3A monomer, 28 kDa Mus musculus protein Kinesin-like protein KIF3B monomer, 32 kDa Mus musculus protein Kinesin-associated protein 3 monomer, 81 kDa Mus musculus protein
Buffer:	25 mM Tris-HCl, 200 mM NaCl, 1 mM DTT, 5% glycerol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 17

R_g^Guinier	5.4	nm
D_max	19.5	nm
Volume^Porod	763	nm³

SASDMY7 – Poly-histidine tagged Myosin X component at 8979 eV

Unconventional myosin-X component experimental SAS data

Unconventional myosin-X component Kratky plot

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.2	nm
D_max	8.5	nm
Volume^Porod	24	nm³

SASDMZ7 – Poly-histidine tagged Myosin X component at 8981 eV

Unconventional myosin-X experimental SAS data

Sample:	Unconventional myosin-X dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.2	nm
D_max	8.0	nm
Volume^Porod	24	nm³

SASDM28 – Poly-histidine tagged Myosin X component at 8983 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.2	nm
D_max	8.0	nm
Volume^Porod	24	nm³

SASDM38 – Poly-histidine tagged Myosin X component at 8985 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.2	nm
D_max	8.0	nm
Volume^Porod	24	nm³

SASDM48 – Poly-histidine tagged Myosin X component at 8987 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.2	nm
D_max	8.0	nm
Volume^Porod	24	nm³

SASDM58 – Poly-histidine tagged Myosin X component at 8989 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.2	nm
D_max	8.0	nm
Volume^Porod	24	nm³

SASDM68 – Poly-histidine tagged Myosin X component at 8991 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.2	nm
D_max	8.0	nm
Volume^Porod	24	nm³

SASDM78 – Poly-histidine tagged Myosin X component at 8993 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.2	nm
D_max	8.0	nm

SASDM88 – Poly-histidine tagged Myosin X component with CuSO4 at 8979 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.4	nm
D_max	10.5	nm
Volume^Porod	27	nm³

SASDM98 – Poly-histidine tagged Myosin X component with CuSO4 at 8981 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.5	nm
D_max	11.5	nm
Volume^Porod	27	nm³

SASDMA8 – Poly-histidine tagged Myosin X component with CuSO4 at 8983 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.4	nm
D_max	10.5	nm
Volume^Porod	27	nm³

SASDMB8 – Poly-histidine tagged Myosin X component with CuSO4 at 8985 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.5	nm
D_max	11.5	nm
Volume^Porod	27	nm³

SASDMC8 – Poly-histidine tagged Myosin X component with CuSO4 at 8987 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.4	nm
D_max	11.0	nm
Volume^Porod	28	nm³

SASDMD8 – Poly-histidine tagged Myosin X component with CuSO4 at 8989 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.4	nm
D_max	11.5	nm
Volume^Porod	27	nm³

SASDME8 – Poly-histidine tagged Myosin X component with CuSO4 at 8991 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.4	nm
D_max	11.5	nm
Volume^Porod	28	nm³

SASDMF8 – Poly-histidine tagged Myosin X component with CuSO4 at 8993 eV

Sample:	Unconventional myosin-X component dimer, 15 kDa Homo sapiens protein
Buffer:	HEPES, 5% glycerol, 150 mM NaCl, pH: 7.4
Experiment:	SAXS data collected at BL-15A2, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2021 Mar 16

K -edge anomalous SAXS for protein solution structure modeling Acta Crystallographica Section D Structural Biology 78(2) (2022)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.4	nm
D_max	11.5	nm
Volume^Porod	28	nm³

SASDQQ8 – Endo-D-arabinanase, 54 kDa, dimer, Microbacterium arabinogalactanolyticum

Endo-D-arabinanase experimental SAS data

Sample:	Endo-D-arabinanase dimer, 107 kDa Microbacterium arabinogalactanolyticum protein
Buffer:	20 mM Tris-HCl, 200 mM NaCl, pH: 7.5
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2022 Nov 3

Identification and characterization of endo-α-, exo-α-, and exo-β-d-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria Nature Communications 14(1) (2023)
...Shimizu N, Arakawa T, Yamada C, Kitahara K, Tanaka K, Ito Y, Fushinobu S, Fujita K

R_g^Guinier	3.1	nm
D_max	10.4	nm
Volume^Porod	131	nm³

SASDSB9 – SAXS data of poly-histidine tagged Ribose Binding Protein (9 mg/mL) from Escherichia coli

Sample:	Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer:	50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2017 Dec 15

SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.1	nm
D_max	8.6	nm
Volume^Porod	35	nm³

SASDSC9 – SAXS data of poly-histidine tagged Ribose Binding Protein (6 mg/mL) from Escherichia coli

Sample:	Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer:	50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2017 Dec 15

SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.1	nm
D_max	8.4	nm
Volume^Porod	37	nm³

SASDSD9 – SAXS data of poly-histidine tagged Ribose Binding Protein (3 mg/mL) from Escherichia coli

Sample:	Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein
Buffer:	50 mM Tris, 50 mM NaCl, 10% glycerol, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2017 Dec 15

SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.1	nm
D_max	8.3	nm
Volume^Porod	39	nm³

SASDSE9 – SAXS data of poly-histidine tagged Ribose Binding Protein (9 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Sample:	Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein Ribose monomer, 0 kDa
Buffer:	50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2017 Dec 15

SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.0	nm
D_max	8.3	nm
Volume^Porod	35	nm³

SASDSF9 – SAXS data of poly-histidine tagged Ribose Binding Protein (6 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Sample:	Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein Ribose monomer, 0 kDa
Buffer:	50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2017 Dec 15

SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.0	nm
D_max	7.6	nm
Volume^Porod	36	nm³

SASDSG9 – SAXS data of poly-histidine tagged Ribose Binding Protein (3 mg/mL) from Escherichia coli in the presence of 1 mM ribose

Sample:	Ribose import binding protein RbsB monomer, 30 kDa Escherichia coli (strain … protein Ribose monomer, 0 kDa
Buffer:	50 mM Tris, 50 mM NaCl, 10% glycerol, 1 mM ribose, pH: 7
Experiment:	SAXS data collected at BM29, ESRF on 2017 Dec 15

SAXS/WAXS data of conformationally flexible ribose binding protein Data in Brief :109932 (2023)
...Shimizu N, Chaudhuri B

R_g^Guinier	2.1	nm
D_max	7.4	nm
Volume^Porod	39	nm³

SASDLD8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.270)

Iron-sulfur cluster assembly 1 homolog, mitochondrial experimental SAS data

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.2

SASDLE8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.280)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.2

SASDLF8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.290)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.1

SASDLG8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.300)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.0

SASDLH8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.310)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier

1.9

SASDLJ8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.320)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.0

SASDLK8 – The Fe–S cluster assembly 1 homolog of pigeon (Elution No.330)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 25

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier

2.0

SASDL58 – The Fe–S cluster assembly 1 homolog of pigeon before applying the external magnetic field (0 min)

Iron-sulfur cluster assembly 1 homolog, mitochondrial Kratky plot

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier	4.7	nm
D_max	15.8	nm

SASDL68 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 5 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.0	nm
D_max	16.2	nm

SASDL78 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 10 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier	4.9	nm
D_max	16.5	nm

SASDL88 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 30 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.1	nm
D_max	17.2	nm

SASDL98 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.4 : 60 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.5	nm
D_max	19.1	nm

SASDLA8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 5 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.7	nm
D_max	18.9	nm

SASDLL8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 10 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.7	nm
D_max	18.9	nm

SASDLB8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 30 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.4	nm
D_max	19.0	nm

SASDLC8 – The Fe–S cluster assembly 1 homolog of pigeon (retention time at the magnet position No.5 : 60 min)

Sample:	Iron-sulfur cluster assembly 1 homolog, mitochondrial , 15 kDa Columba livia protein
Buffer:	20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol, pH: 8
Experiment:	SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Nov 30

Magnetic field effects on the structure and molecular behavior of pigeon iron–sulfur protein Protein Science 31(6) (2022)
...Shimizu R, Adachi M, Hirai M

R_g^Guinier	5.7	nm
D_max	21.2	nm

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